View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12315_high_4 (Length: 479)
Name: NF12315_high_4
Description: NF12315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12315_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 47709919 - 47709477
Alignment:
| Q |
17 |
aaaaataaagtatatttcacttcagtcaaggttggcatcagcttggaactcactataaactcattttaccatggcttttttaagttccaacatgttgatt |
116 |
Q |
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| T |
47709919 |
aaaaataaagtatatttcacttcactcaaggttggcatcagcttggaactcactataaactcattttaccatggcttttttaagttccaaaatgttgatt |
47709820 |
T |
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| Q |
117 |
ataaaagtaagctagggatagatttggagttgaaagtatgtataaactcannnnnnnatgtttaggattgagggcaaaaataaacatgtaaaaggaattt |
216 |
Q |
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| T |
47709819 |
ataaaagttagctagggatagatttggagttgaaagtatgtataaactca-ttttttatgtttaggattgagggcaaaaataaacatgtaaaaggaattt |
47709721 |
T |
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| Q |
217 |
ttcttcattgttaatttgttcaaagacattgactgctattgatg---tattattagactttctggtatgctattttcttgttgtagatattgttcaaaga |
313 |
Q |
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| T |
47709720 |
ttcttca--------ttgttcaaagacattgactgctattgatgtattattattagactttctggtatgctattttcttgttgtagatattgttcaaaga |
47709629 |
T |
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| Q |
314 |
tattctgaattgtcaatgactgtggatccatccaacacaacagccttgcacactgctgttctagcagttgcttgttttgtttggagttttctctcctata |
413 |
Q |
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| T |
47709628 |
tattctgaattgtcaat-------gatccatccaacacaacagccttgcaaactgctgttctagcagttgcttgttttgtttggagttttctctcctata |
47709536 |
T |
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| Q |
414 |
tcatatctttctaggtcaccttgcacatcttgtattgggtttatcagttttctctgctc |
472 |
Q |
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| T |
47709535 |
tcatatctttctaggtcaccttgcacatcttgtattgggtttatcagttttctctgctc |
47709477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 23033342 - 23033286
Alignment:
| Q |
315 |
attctgaattgtcaatgactgtggatccatccaacacaacagccttgcacactgctg |
371 |
Q |
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| T |
23033342 |
attctgaattgtcaatgactgtggatccatccaacaccaccgccttacacacagctg |
23033286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 41066310 - 41066265
Alignment:
| Q |
318 |
ctgaattgtcaatgactgtggatccatccaacacaacagccttgca |
363 |
Q |
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| T |
41066310 |
ctgaattgtcaatgacagtggatccatcaaacacaacagctttgca |
41066265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 18184970 - 18185010
Alignment:
| Q |
252 |
ctattgatgtattattagactttctggtatgctattttctt |
292 |
Q |
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| T |
18184970 |
ctattgatatattatcagactttctggtatgctattttctt |
18185010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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