View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12315_high_5 (Length: 418)
Name: NF12315_high_5
Description: NF12315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12315_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 2139810 - 2139427
Alignment:
| Q |
20 |
caccagaatatattatattaaaaattaaataaaggcattacatttaggctaaattaaacacttaatcaaaaggaatattttgtatgttcaagtgaaaaac |
119 |
Q |
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| T |
2139810 |
caccagaatatattatattaaaaatttaataaaggcattacattcaggctaaattaaacacttaatcaaaaggaatattttgtatgttcaagtgaaaaac |
2139711 |
T |
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| Q |
120 |
acttaatcaagaaagtgaagaatagaataaagattatacattggtggccaccataagaaaaatgcatagaagaatggatttggaggccattttcttttat |
219 |
Q |
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| T |
2139710 |
acttaatcaagaaagtgaagaatagaataaagattatacattggtggccaccataagaaaaatgcatagaagaatggatttggaggccattttcttttat |
2139611 |
T |
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| Q |
220 |
a--tatagagcaatctgtgagtgttacttgaaacaaatattggaccttgtatatatagaggtcaagttgggtaggagnnnnnnntgttaggtaaattaaa |
317 |
Q |
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| T |
2139610 |
atatatagagcaatctgtgagtgttacttgaaacaaatattggaccttgtatatatagaggtcaagttgggtaggagaaaaaaatgttaggtaaattaaa |
2139511 |
T |
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| Q |
318 |
tcaataatgtaatgtacaaagtacaagaataaattgtttaggcgtatacaagttacaccattgtgcctcttaatatagtgtctg |
401 |
Q |
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| T |
2139510 |
tcaataatgtaatgtacaaagtacaagaataaattgtttaggcgtatacaagttacaccattgtgcctcttaatatagtgtctg |
2139427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 2123703 - 2123642
Alignment:
| Q |
132 |
aagtgaagaatagaataaagattatacattggtggccaccataagaaaaatgcatagaagaa |
193 |
Q |
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| T |
2123703 |
aagtgaaaagtagaataaagattataccttagtggccagcacaagaaaaatgcctagaagaa |
2123642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 2145014 - 2144951
Alignment:
| Q |
152 |
attatacattggtggccaccataagaaaaatgcat---agaagaatggatttggaggccatttt |
212 |
Q |
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| T |
2145014 |
attataccttagtggccaccataagaaaaatgcctagaagaagaatggatttggaagccatttt |
2144951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 2123496 - 2123454
Alignment:
| Q |
303 |
gttaggtaaattaaatcaataatgtaatgtacaaagtacaaga |
345 |
Q |
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| T |
2123496 |
gttaggtgcattaaattaataatgtaatgtacaaagtacaaga |
2123454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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