View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12315_low_1 (Length: 1068)

Name: NF12315_low_1
Description: NF12315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12315_low_1
NF12315_low_1
[»] chr6 (42 HSPs)
chr6 (208-1062)||(31289542-31290370)
chr6 (614-960)||(26651948-26652300)
chr6 (614-960)||(26757916-26758268)
chr6 (26-210)||(31290408-31290598)
chr6 (566-911)||(27421059-27421403)
chr6 (589-739)||(26632715-26632865)
chr6 (589-739)||(26738691-26738841)
chr6 (430-527)||(27420964-27421061)
chr6 (974-1061)||(27713873-27713960)
chr6 (974-1060)||(26853949-26854035)
chr6 (991-1062)||(26631744-26631815)
chr6 (991-1062)||(26737719-26737790)
chr6 (974-1061)||(26966390-26966477)
chr6 (983-1062)||(27422333-27422412)
chr6 (974-1062)||(26890735-26890823)
chr6 (974-1062)||(27651967-27652055)
chr6 (462-678)||(31394770-31394987)
chr6 (214-262)||(26952498-26952546)
chr6 (214-262)||(26961991-26962039)
chr6 (214-262)||(26980289-26980337)
chr6 (36-101)||(2820373-2820438)
chr6 (225-262)||(26649356-26649393)
chr6 (225-262)||(26755324-26755361)
chr6 (165-210)||(27608250-27608295)
chr6 (165-210)||(27715637-27715682)
chr6 (48-120)||(5970098-5970170)
chr6 (48-120)||(15443692-15443764)
chr6 (163-210)||(26058891-26058938)
chr6 (163-210)||(26078861-26078908)
chr6 (50-121)||(32313403-32313474)
chr6 (63-121)||(8931591-8931649)
chr6 (62-120)||(9195744-9195802)
chr6 (62-120)||(9617445-9617503)
chr6 (62-120)||(16766708-16766766)
chr6 (59-108)||(10335378-10335427)
chr6 (51-120)||(25038061-25038130)
chr6 (63-120)||(26562701-26562758)
chr6 (839-916)||(26632634-26632711)
chr6 (839-916)||(26738610-26738687)
chr6 (176-209)||(26876539-26876572)
chr6 (59-104)||(29449689-29449734)
chr6 (49-102)||(34625732-34625785)
[»] scaffold0003 (3 HSPs)
scaffold0003 (566-911)||(65960-66304)
scaffold0003 (430-527)||(66302-66399)
scaffold0003 (983-1062)||(64951-65030)
[»] chr8 (7 HSPs)
chr8 (983-1064)||(29269748-29269829)
chr8 (51-110)||(12985392-12985451)
chr8 (62-120)||(22651987-22652045)
chr8 (172-210)||(29270983-29271021)
chr8 (62-120)||(29447100-29447158)
chr8 (59-113)||(31681827-31681881)
chr8 (49-114)||(31548289-31548354)
[»] scaffold0349 (2 HSPs)
scaffold0349 (974-1061)||(17984-18071)
scaffold0349 (165-210)||(16263-16308)
[»] chr1 (12 HSPs)
chr1 (38-169)||(264591-264724)
chr1 (62-120)||(44482241-44482299)
chr1 (48-108)||(14332406-14332465)
chr1 (54-98)||(23605132-23605176)
chr1 (50-93)||(17080898-17080941)
chr1 (50-120)||(5376490-5376560)
chr1 (52-114)||(6427351-6427413)
chr1 (351-381)||(18008612-18008642)
chr1 (62-120)||(25361897-25361955)
chr1 (62-116)||(34712377-34712431)
chr1 (57-103)||(43609825-43609871)
chr1 (48-93)||(21057780-21057825)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-114)||(99889-99956)
[»] chr5 (11 HSPs)
chr5 (62-120)||(22423802-22423860)
chr5 (57-115)||(4991372-4991429)
chr5 (47-116)||(38749557-38749626)
chr5 (71-114)||(16374338-16374381)
chr5 (50-120)||(3966502-3966572)
chr5 (50-120)||(18592072-18592142)
chr5 (62-120)||(21522761-21522819)
chr5 (62-120)||(21533327-21533385)
chr5 (52-114)||(43208270-43208332)
chr5 (52-113)||(36838544-36838605)
chr5 (63-116)||(41558648-41558701)
[»] chr3 (7 HSPs)
chr3 (59-164)||(45382751-45382858)
chr3 (50-121)||(16192739-16192810)
chr3 (52-120)||(8039825-8039893)
chr3 (47-98)||(19323460-19323511)
chr3 (51-106)||(28576716-28576771)
chr3 (48-110)||(35990525-35990587)
chr3 (51-116)||(3185242-3185306)
[»] chr7 (9 HSPs)
chr7 (62-120)||(6028636-6028694)
chr7 (62-115)||(7328686-7328739)
chr7 (62-123)||(7438717-7438778)
chr7 (53-116)||(31808503-31808566)
chr7 (59-106)||(43160492-43160539)
chr7 (62-116)||(17307904-17307958)
chr7 (62-120)||(24339653-24339711)
chr7 (51-116)||(16341496-16341561)
chr7 (50-119)||(32308119-32308188)
[»] chr2 (2 HSPs)
chr2 (62-108)||(44605141-44605187)
chr2 (48-110)||(31026692-31026754)
[»] chr4 (6 HSPs)
chr4 (62-121)||(24613690-24613749)
chr4 (50-120)||(35723374-35723445)
chr4 (47-98)||(44796974-44797025)
chr4 (37-75)||(18727855-18727893)
chr4 (62-123)||(4383379-4383439)
chr4 (51-116)||(18513235-18513300)


Alignment Details
Target: chr6 (Bit Score: 677; Significance: 0; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 208 - 1062
Target Start/End: Complemental strand, 31290370 - 31289542
Alignment:
Q  208 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290370 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 31290271  T
Q  308 actagtaaaatagaatgtactactctatagtactacactaagataacttgtactacaagttatctatctaagctatataatatcctcattttgttcacgg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| ||| ||    
T  31290270 actagtaaaatagaatgtactactctatagtactacactaagataacttgtacta-----------tctaagctatataatatcctcattttgctcatgg 31290182  T
Q  408 tgtaatagtctccattgaagagaaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattg 507  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290181 tgtaatagtctccatagaagagaaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattg 31290082  T
Q  508 gtagcaacagaggagaaaaagtgtgacagcaattgccggaaatcgccgccagggaacgaaatcagcactcatcaccgacgggatcaaagattacgatgca 607  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290081 gtagcaacagaggagaaaaagtgtgacagcaatttccggaaatcgccgccagggaacgaaatcagcactcatcaccgacgggatcaaagattacgatgca 31289982  T
Q  608 gaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31289981 gaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatc---------- 31289892  T
Q  708 gggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggc 807  Q
      ||||||          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||    
T  31289891 --gatcgc----------gtccatagggaatcctcacaatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacacattctttttttggc 31289804  T
Q  808 actgatgtgagccatatctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccga 907  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31289803 actgatgtgagccatatctctgcactgccttcaataattcatcattgaaatcattgggaaaatgcaaatatcacagatcttgataacaacctttcaccga 31289704  T
Q  908 gaatatgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgttttt 1000  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289703 gaatatgttgcactctctggcaaccatttatcaacatccagtacaggttgctgcagctgtgtttttacacaagaaactgaactggcagagaagtgttttt 31289604  T
Q  1001 acacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31289603 acacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 31289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 614 - 960
Target Start/End: Complemental strand, 26652300 - 26651948
Alignment:
Q  614 agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatc 713  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| ||||||| |||| |||||||| |||||||||| | |||| |||||||||||||||    
T  26652300 agggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatc 26652201  T
Q  714 gcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgat 813  Q
     | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| ||||    
T  26652200 acatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgat 26652103  T
Q  814 gtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaata 912  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||     
T  26652102 gtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatc 26652003  T
Q  913 tgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgt 960  Q
    |||||       ||||||||||||||||||||||| |||||||| ||||||||||    
T  26652002 tgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgt 26651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 614 - 960
Target Start/End: Complemental strand, 26758268 - 26757916
Alignment:
Q  614 agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatc 713  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| ||||||| |||| |||||||| |||||||||| | |||| |||||||||||||||    
T  26758268 agggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatc 26758169  T
Q  714 gcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgat 813  Q
     | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||        |||| ||||    
T  26758168 acatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt--ttttttggcaatgat 26758071  T
Q  814 gtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaata 912  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||     
T  26758070 gtgaaccataatctctgcactgccttcaataattcatccttgaaatcattggaaaaacgcaaatatcacagatcttcataacatcctttcaccgagaatc 26757971  T
Q  913 tgttg-------tggcaaccatttatcaacatccagtacaggttgctgcagctgt 960  Q
    |||||       ||||||||||||||||||||||| |||||||| ||||||||||    
T  26757970 tgttgcactctctggcaaccatttatcaacatccaatacaggtttctgcagctgt 26757916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 31290598 - 31290408
Alignment:
Q  26 aaattaacattgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgta------attacatatgtcggtgtcgtgtcggtgt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| |||||||||    
T  31290598 aaattaacattgacattgattcgtcgacaccgatagtaatttgagaaaataacataaatgaatgtatacgtaattacatatgtcggtgtcatgtcggtgt 31290499  T
Q  120 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  31290498 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatacaggtgcctcgagcctcatgtagtttctgt 31290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 566 - 911
Target Start/End: Original strand, 27421059 - 27421403
Alignment:
Q  566 aaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtca 665  Q
    |||||||||||||||||||  ||||| ||| || | ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||| || ||||    
T  27421059 aaatcagcactcatcaccgctgggataaaatatgatgatgcagaaaccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtca 27421158  T
Q  666 gtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtc 765  Q
    |||||  |||  |  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  27421159 gtgagcagaaaggtgaacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcc 27421258  T
Q  766 tatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgg 864  Q
    ||||| |||| ||||||  || | |||||  |        ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| |    
T  27421259 tatcttgtaagagtctccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-g 27421356  T
Q  865 gaaaacgcaaatatcacagatcttgataacaacctttcaccgagaat 911  Q
     ||||||||||| |||||| ||||||||||| |||||| | ||||||    
T  27421357 aaaaacgcaaatttcacagctcttgataacatcctttctctgagaat 27421403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 589 - 739
Target Start/End: Complemental strand, 26632865 - 26632715
Alignment:
Q  589 gatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttg 688  Q
    |||||||||||| |||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||| | || |||||    
T  26632865 gatcaaagattaggatgcagataccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttg 26632766  T
Q  689 accgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 739  Q
    ||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26632765 accgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26632715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 589 - 739
Target Start/End: Complemental strand, 26738841 - 26738691
Alignment:
Q  589 gatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttg 688  Q
    |||||||||||| |||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||| | || |||||    
T  26738841 gatcaaagattaggatgcagataccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttg 26738742  T
Q  689 accgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 739  Q
    ||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26738741 accgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26738691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 27420964 - 27421061
Alignment:
Q  430 aaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaa 527  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  |||||||| ||||||||||||||    
T  27420964 aaagagtgctatggatgtcactcaaatccaacgccagagacaagaagctgaaaaccctaaaattttctctatcagttggtagccacagaggagaaaaa 27421061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 974 - 1061
Target Start/End: Original strand, 27713873 - 27713960
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 1061  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  27713873 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 27713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 974 - 1060
Target Start/End: Complemental strand, 26854035 - 26853949
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttc 1060  Q
    |||||||  ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  26854035 aaactgacttggcagaaaattgtttttacacaagaataacttattaatcacaagagccatacagtgttgttgctgctacacaagttc 26853949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 991 - 1062
Target Start/End: Complemental strand, 26631815 - 26631744
Alignment:
Q  991 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26631815 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26631744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 991 - 1062
Target Start/End: Complemental strand, 26737790 - 26737719
Alignment:
Q  991 aagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||    
T  26737790 aagtgtttttacacaagaataccttattaatcacaagagccatacaatgttgttgcagctacacaagttctg 26737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 974 - 1061
Target Start/End: Complemental strand, 26966477 - 26966390
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 1061  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||    
T  26966477 aaactgatttggcagcaaagtgtttttacacaagaataccttattaatctcaagagccatacagttttgttgctgctacacaagttct 26966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 983 - 1062
Target Start/End: Original strand, 27422333 - 27422412
Alignment:
Q  983 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27422333 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 27422412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 974 - 1062
Target Start/End: Complemental strand, 26890823 - 26890735
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||  ||||| ||||||    
T  26890823 aaactgatttggcagaaaagtgtttttacaaaagaataacttattaatcacaagagccattcggtgttgttgctgtgacacaagttctg 26890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 974 - 1062
Target Start/End: Original strand, 27651967 - 27652055
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    |||||||  ||||||| ||||||||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||| || ||||||    
T  27651967 aaactgatttggcagaaaagtgtttttacacatgaataacttattaatcacaaaagttatacagtgttgttgctgctacgcaagttctg 27652055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 462 - 678
Target Start/End: Complemental strand, 31394987 - 31394770
Alignment:
Q  462 gccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaagtgtgacagcaattgccggaaatcgccgccaggg 561  Q
    ||||||||||||||| |  | |||||||  ||| ||||||||| ||  ||||| |||||||||||| |||||||| |||   | ||||| ||||||        
T  31394987 gccagagacaagaagattcaaaccccaagttttgctctatccaatgccagcaatagaggagaaaaactgtgacagaaatgatcagaaattgccgcccaat 31394888  T
Q  562 aacgaaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgttt-ccaccactg 660  Q
    ||||||||| ||  |||| ||||   |||| |||||| | |||||| |||  | | |||||||||||||||||| |||||||||| |||| |||||||||    
T  31394887 aacgaaatctgcgttcataaccgcatggattaaagatgatgatgcaaaaaccatgtatattgaagctgaaggtcaggtgttgtgacgtttaccaccactg 31394788  T
Q  661 cgtcagtgagtggaactg 678  Q
    || ||||| | |||||||    
T  31394787 cgacagtgcggggaactg 31394770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 26952546 - 26952498
Alignment:
Q  214 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 262  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26952546 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 26962039 - 26961991
Alignment:
Q  214 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 262  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26962039 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26961991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 26980337 - 26980289
Alignment:
Q  214 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 262  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  26980337 tatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaa 26980289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 2820438 - 2820373
Alignment:
Q  36 tgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatg 101  Q
    |||||||||| |||  | ||| ||| |||||||||||||||| ||||||||||||||| |||||||    
T  2820438 tgacattgatatgtaaataccaataataatttgagaaaataaaataaatgaatgtaatcacatatg 2820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 26649393 - 26649356
Alignment:
Q  225 atatattgcaagataaaacaacaactaacctgactcaa 262  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26649393 atatattgcaagataaaacaacaacgaacctgactcaa 26649356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 26755361 - 26755324
Alignment:
Q  225 atatattgcaagataaaacaacaactaacctgactcaa 262  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26755361 atatattgcaagataaaacaacaacgaacctgactcaa 26755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 27608250 - 27608295
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  27608250 gtttgggaattcaaaataggtgcatccagcctcatgtagtttctgt 27608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 27715637 - 27715682
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27715637 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 27715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 5970170 - 5970098
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| | || |||||||| ||||| |||||| | | |||||||||| |||| |||||||||||||||||    
T  5970170 gtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtc 5970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 15443692 - 15443764
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||| | ||| ||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||    
T  15443692 gtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgttgtgtcgatgtc 15443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 26058938 - 26058891
Alignment:
Q  163 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26058938 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 26078908 - 26078861
Alignment:
Q  163 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26078908 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 32313403 - 32313474
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    ||||||| ||| ||| ||||||||||||||| | | |||| ||||| || ||| ||||||||||||||||||    
T  32313403 cgacaccaataataagttgagaaaataacatgattcaatgcaattatatgtgtgggtgtcgtgtcggtgtca 32313474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 8931649 - 8931591
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||||||||||||||| | | | |||||| || ||||| ||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtca 8931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 9195802 - 9195744
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||||    
T  9195802 taatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 9617445 - 9617503
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | |||||||||| || ||||||||||||  |||||||    
T  9617445 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 16766708 - 16766766
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 10335427 - 10335378
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    ||||||||||||||||| |||||| |||||||||| | || |||||||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 25038130 - 25038061
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||| || |||||||||||||| |||||| | | |||||||||| |||||||| | |||| ||||||    
T  25038130 gacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtc 25038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 26562701 - 26562758
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||||||||| |||||| | | |||||||| || ||||| |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 916
Target Start/End: Complemental strand, 26632711 - 26632634
Alignment:
Q  839 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 916  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26632711 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 916
Target Start/End: Complemental strand, 26738687 - 26738610
Alignment:
Q  839 caataattcatcattgaaatcattgggaaaacgcaaatatcacagatcttgataacaacctttcaccgagaatatgtt 916  Q
    |||||||||||||| |||||||| | |||||   |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  26738687 caataattcatcatcgaaatcatcgtgaaaaacaaaatttcactactcttgataacatcctttcaccgagaatctgtt 26738610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 26876572 - 26876539
Alignment:
Q  176 gaatataggtgcctccagcctcatgtagtttctg 209  Q
    |||||||||||| |||||||||||||||||||||    
T  26876572 gaatataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 29449689 - 29449734
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 104  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 34625732 - 34625785
Alignment:
Q  49 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgt 102  Q
    |||||||||||| |||||||||||||| |  ||| |||||||||| ||||||||    
T  34625732 tcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacatatgt 34625785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 146; Significance: 2e-76; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 566 - 911
Target Start/End: Complemental strand, 66304 - 65960
Alignment:
Q  566 aaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtca 665  Q
    |||||||||||||||||||  ||||| ||| || | ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||| || ||||    
T  66304 aaatcagcactcatcaccgctgggataaaatatgatgatgcagaaaccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtca 66205  T
Q  666 gtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtc 765  Q
    |||||  |||  |  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  66204 gtgagcagaaaggtgaacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcc 66105  T
Q  766 tatctcgtaaaagtctcatactaaacacattcnnnnnnnggcactgatgtgagccat-atctctgcactgccttcaataattcatcattgaaatcattgg 864  Q
    ||||| |||| ||||||  || | |||||  |        ||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||| |    
T  66104 tatcttgtaagagtctccaaccatacaca-actttttttagcactgatgtgagccataatctatgcactgccttcaataattcatcgtcgaaatcatt-g 66007  T
Q  865 gaaaacgcaaatatcacagatcttgataacaacctttcaccgagaat 911  Q
     ||||||||||| |||||| ||||||||||| |||||| | ||||||    
T  66006 aaaaacgcaaatttcacagctcttgataacatcctttctctgagaat 65960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 430 - 527
Target Start/End: Complemental strand, 66399 - 66302
Alignment:
Q  430 aaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaa 527  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  |||||||| ||||||||||||||    
T  66399 aaagagtgctatggatgtcactcaaatccaacgccagagacaagaagctgaaaaccctaaaattttctctatcagttggtagccacagaggagaaaaa 66302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 983 - 1062
Target Start/End: Complemental strand, 65030 - 64951
Alignment:
Q  983 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctg 1062  Q
    ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  65030 tggcagaaaactgcttttacacaagaataccttattaattacaagagccatacagtgttgtttctgctactcaagttctg 64951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 983 - 1064
Target Start/End: Original strand, 29269748 - 29269829
Alignment:
Q  983 tggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttctgct 1064  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||    
T  29269748 tggcagagaagtgtttttacacaagaataacttaataatcacaagagccatacagtgttgttgctgctacacaagttctgct 29269829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 12985392 - 12985451
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||| ||| |||||||||||||| |||||| | |||||||| | ||||||||||||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcg 12985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 22651987 - 22652045
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | ||| ||||||||  |||||||||||||||||||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 29270983 - 29271021
Alignment:
Q  172 aattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29270983 aattgaatataggtgcatccagtctcatgtagtttctgt 29271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 29447158 - 29447100
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| ||||||||||    
T  29447158 taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtc 29447100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 31681881 - 31681827
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 113  Q
    ||||||||| ||||||| |||||| |||||| ||| |||| ||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 31548354 - 31548289
Alignment:
Q  49 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||| | |||||| ||||| |||||| | |||||||| |||| |||||||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 974 - 1061
Target Start/End: Complemental strand, 18071 - 17984
Alignment:
Q  974 aaactgaactggcagagaagtgtttttacacaagaataccttattaatcacaagagccatacagtgttgtttctgctacacaggttct 1061  Q
    |||||||  ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||    
T  18071 aaactgatttggcagagaagtgtttttacacaagaataacttaataatcacaagagacatacagtgttgttgctgctacacaagttct 17984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 16308 - 16263
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  16308 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 264591 - 264724
Alignment:
Q  38 acattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgtt 135  Q
    |||||||||||||| |||| ||| |||||| ||||| |||||||  | |||||||| |||| ||| ||||||||||| ||||| || ||  ||| |||||    
T  264591 acattgatttgtcgtcaccaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgtcgaacacaaacatatgtt 264690  T
Q  136 ggacaccagacacgccttcaatgagaagtgtttg 169  Q
    || |||| |||||||| || ||||||||||||||    
T  264691 gggcacctgacacgccatctatgagaagtgtttg 264724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 44482241 - 44482299
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||    
T  44482241 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 14332406 - 14332465
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    |||||||||||||  ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  14332406 gtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  54 accgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 17080941 - 17080898
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaat 93  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  17080941 cgacaccaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 5376560 - 5376490
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || |||||| |||||||||||||| | | |||||||| |  |||||||||||||||| ||||    
T  5376560 cgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtc 5376490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 6427351 - 6427413
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||| || |||||||||||||| |||||| | |||||||||| || ||| |||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 381
Target Start/End: Complemental strand, 18008642 - 18008612
Alignment:
Q  351 taacttgtactacaagttatctatctaagct 381  Q
    |||||||||||||||||||||||||||||||    
T  18008642 taacttgtactacaagttatctatctaagct 18008612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 25361897 - 25361955
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||| ||||||||||||||||    
T  25361897 taatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 34712431 - 34712377
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||||||||||| | | |||||||| || |||| ||||||||||||    
T  34712431 taatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcgg 34712377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 43609871 - 43609825
Alignment:
Q  57 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtc 103  Q
    |||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 21057780 - 21057825
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaat 93  Q
    |||||||||| || |||||| |||||||||||||| ||||||||||    
T  21057780 gtcgacaccgctaataattttagaaaataacataattgaatgtaat 21057825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 99889 - 99956
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| |||||| |||||||||||||| | |||||||||| || ||| |||||||||||    
T  99889 tgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 22423860 - 22423802
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||    
T  22423860 taatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 4991429 - 4991372
Alignment:
Q  57 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 115  Q
    ||||||||||||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4991429 gatagtaatttgagaaaatgacataaat-catgtaattagatgtgtcggtgtcgtgtcg 4991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 38749626 - 38749557
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||||||||| |||||||| ||||| |||||| | |||||||||| || ||| ||||| |||||||    
T  38749626 tgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcgg 38749557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 16374381 - 16374338
Alignment:
Q  71 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  16374381 aaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtc 16374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 3966502 - 3966572
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || |||||||||||||| ||| || | | |||||||| || ||||||||||||||| |||||    
T  3966502 cgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtc 3966572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 18592072 - 18592142
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || || ||| ||||||| |||||| | |||||||||| || || ||||||||||||||||||    
T  18592072 cgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtc 18592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 21522761 - 21522819
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21522761 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 21533327 - 21533385
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21533327 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 43208332 - 43208270
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||||||||||||| |||||| | |||||||| | || |||| |||| |||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtc 43208270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 36838544 - 36838605
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 113  Q
    |||||| || |||||||||||||| |||||| | | |||||||| || ||||||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 41558701 - 41558648
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||| |||||| | |||||||||| || |||| ||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcgg 41558648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 45382751 - 45382858
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgccttcaa 156  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||| | ||| ||||||| | ||  ||| |||| ||||||| |||| |||||| |    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcga 45382850  T
Q  157 tgagaagt 164  Q
    | ||||||    
T  45382851 tcagaagt 45382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 16192810 - 16192739
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||| || ||||||||||||||||||||| | | |||||||| || ||| | ||||||||||||||||    
T  16192810 cgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtca 16192739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 8039893 - 8039825
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| || |||||||||||||| | |||| | | |||||||| || |||||||||||||||||||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 19323511 - 19323460
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    ||||||||| ||||||||||||||||||| |||||| ||||| |||| ||||    
T  19323511 tgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacat 19323460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 28576716 - 28576771
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 106  Q
    ||||||| || |||||||||||||| ||| || ||||||||||||||| |||||||    
T  28576716 gacaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggt 28576771  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 35990587 - 35990525
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||  |||| |||| ||||||    
T  35990587 gtcgacactgataataatttgagaaaataaaataactgaatgtaaccacatgtgtcagtgtcg 35990525  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 3185306 - 3185242
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||| ||||| |||||| |||| ||| ||||| ||||||||||||||| |||| ||||||||||||    
T  3185306 gacatcgataataatttcagaagata-cataattgaatgtaattacatgtgtcagtgtcgtgtcgg 3185242  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 6028636 - 6028694
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || ||||||||| | |||||||||||| |||||||||||||||| |||||    
T  6028636 taatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtc 6028694  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 7328739 - 7328686
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 115  Q
    ||||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  7328739 taatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7438717 - 7438778
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 123  Q
    |||||||| ||||| |||||| | ||||||||||||  |||||||||| |||||||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaa 7438778  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 31808566 - 31808503
Alignment:
Q  53 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||| |||||||||||||| ||| || | |||||||| |||| ||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgg 31808503  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 43160492 - 43160539
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 106  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 17307904 - 17307958
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||||||||||| | | |||||||| || ||| |||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 24339653 - 24339711
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 16341496 - 16341561
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||| |||| |||||||||||||| |||||| | | |||||||| || || ||||||||||||||    
T  16341496 gacactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcgg 16341561  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 32308119 - 32308188
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    |||||||| || |||||||||||||| |||||| | | |||||||  || |||| |||||||||||||||    
T  32308119 cgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 44605187 - 44605141
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  44605187 taatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 31026692 - 31026754
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    ||||| ||||||| |||||| ||||||| |||||| | |||||||| | ||||||||||||||    
T  31026692 gtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 24613749 - 24613690
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| |||||||||||    
T  24613749 taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtca 24613690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 35723445 - 35723374
Alignment:
Q  50 cgacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || ||||||||||||||| |||||| | |||||||||| || |||| ||||||| ||||||||    
T  35723445 cgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgtcgtatcggtgtc 35723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 44797025 - 44796974
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    |||| ||||||| | ||||||||||||||||||||| | |||||||||||||    
T  44797025 tgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacat 44796974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 18727855 - 18727893
Alignment:
Q  37 gacattgatttgtcgacaccgatagtaatttgagaaaat 75  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  18727855 gacattgatttgtcaacaccaatagtaatttgagaaaat 18727893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 4383379 - 4383439
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 123  Q
    |||||||| ||||| |||||| | | |||||||||| ||||| |||||||||||||||||||    
T  4383379 taatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaa 4383439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 18513300 - 18513235
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||||| |||||||||||||| |||||| | |||||||| | || |||| |||| |||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcgg 18513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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