View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12315_low_2 (Length: 752)
Name: NF12315_low_2
Description: NF12315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12315_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 718; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 13 - 738
Target Start/End: Original strand, 6959186 - 6959911
Alignment:
| Q |
13 |
acctgtgacaatttaagaaaatgcaagtgaataaatgtaactacatatgtctgtgatgtgtcagtgtcggacaccaaaacacgttttcaatttgaattgt |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959186 |
acctgtgataatttaagaaaatgcaagtgaataaatgtaactacatatgtctgtgatgtgtcagtgtcggacaccaaaacacgttttcaatttgaattgt |
6959285 |
T |
|
| Q |
113 |
tggtgctacatagatatgaagtctaacttcatgagttatgattttctttcttagggaacttggtattggaattgttgcgtatagtcctcttgggcgagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959286 |
tggtgctacatagatatgaagtctaacttcatgagttatgattttctttcttagggaacttggtattggaattgttgcgtatagtcctcttgggcgagga |
6959385 |
T |
|
| Q |
213 |
ttcttttcatcaggaacaaagttgcttgacaacttgcaacaggatgactacaggaaggtttgtggaaagatacgtttacagaagttcctgagaattactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959386 |
ttcttttcatcaggaacaaagttgcttgacaacttgcaacaggatgactacaggaaggtttgtggaaagatacgtttacagaagttcctgagaattactt |
6959485 |
T |
|
| Q |
313 |
attcattttgttaatcaactcacctaacagtgattcgcaaccatggattatctgagggtcctttaatctcatacatcaatgatatcttcgtttttaaatt |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959486 |
attcattttgttaatcaactcacctaacagtgattcgcaaccatggattatttgagggtcctttaatctcatacatcaatgatatcttcgtttttaaatt |
6959585 |
T |
|
| Q |
413 |
atttgtgctcattttctggaatgatattttcttttagcccaccttttttcttccataaaacagtttgggaataggtgtaacagtaatggataacactgta |
512 |
Q |
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| T |
6959586 |
atttgtgctcattttctggaatgatattttcttttagcccaccttttttcttccataaaacagtttgggaataggtgtaacagtaatggataacactgta |
6959685 |
T |
|
| Q |
513 |
aattgctagtgaacataattcagaactctaatataaacaagaccatgtagtcaatgtgtattgaatactttgccttctaccctaattaacctcttagtct |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959686 |
aattgctagtgaacataattcagaactctaatataaacaagaccatgtagtcaatgtgtattgaatactttgccttctaccctaattaacctcttagtct |
6959785 |
T |
|
| Q |
613 |
cggtcgatatctgaaccgtgaggagatattcgatgacaaacaaaatgtttaaaaataaataaataatgggcatgattcattagtaaaaacactggtttaa |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6959786 |
cggtcgatatctgaaccgtgaggagatattcgatgacaaacaaaatgtttaaaaataaataaataatgggcatgattcattagtaaaaacactggtttaa |
6959885 |
T |
|
| Q |
713 |
aaagaaggaaaatatgatgtggtttt |
738 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6959886 |
aaagaaggaaaatatgatgtggtttt |
6959911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 108 - 327
Target Start/End: Complemental strand, 6921794 - 6921574
Alignment:
| Q |
108 |
attgttggtgctacatagatatgaagtctaacttcatgagttatgattttctttcttagggaacttggtattggaattgttgcgtatagtcctcttgggc |
207 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
6921794 |
attgtttgtgctacaaagatatgaagtctaacttcatgatttatgattttctttcttagggaactgggtattggaatagttgcatatagtcctcttgggc |
6921695 |
T |
|
| Q |
208 |
gaggattcttttcatcaggaacaaagttgcttgacaacttgcaacaggatgactacaggaaggtttgtggaaaga-tacgtttacagaagttcctgagaa |
306 |
Q |
| |
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|||||||||||||| ||||||||||||| || |||||||||| ||||||||| ||| |||||||||||||||||| | | ||||||||| ||| || ||| |
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| T |
6921694 |
gaggattcttttcaacaggaacaaagttactcgacaacttgccacaggatgattaccggaaggtttgtggaaagactgcttttacagaaattcatgtgaa |
6921595 |
T |
|
| Q |
307 |
ttacttattcattttgttaat |
327 |
Q |
| |
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|||||| ||| |||||||||| |
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| T |
6921594 |
ttacttcttcgttttgttaat |
6921574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 108 - 327
Target Start/End: Original strand, 6956418 - 6956638
Alignment:
| Q |
108 |
attgttggtgctacatagatatgaagtctaacttcatgagttatgattttctttcttagggaacttggtattggaattgttgcgtatagtcctcttgggc |
207 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
6956418 |
attgtttgtgctacaaagatatgaagtctaacttcatgatttatgattttctttcttagggaactgggtattggaatagttgcatatagtcctcttgggc |
6956517 |
T |
|
| Q |
208 |
gaggattcttttcatcaggaacaaagttgcttgacaacttgcaacaggatgactacaggaaggtttgtggaaaga-tacgtttacagaagttcctgagaa |
306 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||||||| ||||||||| ||| |||||||||||||||||| | | ||||||||| ||| || ||| |
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|
| T |
6956518 |
gaggattcttttcaacaggaacaaagttactcgacaacttgccacaggatgattaccggaaggtttgtggaaagactgcttttacagaaattcatgtgaa |
6956617 |
T |
|
| Q |
307 |
ttacttattcattttgttaat |
327 |
Q |
| |
|
|||||| ||| |||||||||| |
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|
| T |
6956618 |
ttacttcttcgttttgttaat |
6956638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 111 - 233
Target Start/End: Complemental strand, 6969025 - 6968904
Alignment:
| Q |
111 |
gttggtgctacatagatatgaagtctaacttcatgagttatgattttctttcttagggaacttggtattggaattgttgcgtatagtcctcttgggcgag |
210 |
Q |
| |
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||||||||| |||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
6969025 |
gttggtgctgcatagatacgaagtctaacctcatgagttatgatttt-tttgttagggaacttggtattggaattgttgcatatagtcctcttgggagag |
6968927 |
T |
|
| Q |
211 |
gattcttttcatcaggaacaaag |
233 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6968926 |
gattcttttcatcaggaacaaag |
6968904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 29587692 - 29587733
Alignment:
| Q |
22 |
aatttaagaaaatgcaagtgaataaatgtaactacatatgtc |
63 |
Q |
| |
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|||||||||||||| |||||| |||||||||| ||||||||| |
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|
| T |
29587692 |
aatttaagaaaatggaagtgattaaatgtaaccacatatgtc |
29587733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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