View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12315_low_9 (Length: 293)
Name: NF12315_low_9
Description: NF12315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12315_low_9 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 45062608 - 45062864
Alignment:
| Q |
19 |
gttcctctaccaagttgttcaccattaacatccctagtaacagtgaaagatccaccagcttgtgattcccaaatgtattgttcatcatcattgtgcttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45062608 |
gttcctctaccaagttgttcaccattaacatccctagtaacagtgaaagatccaccagcttgtgattcccaaatgtattgttcatcatcattgtgcttag |
45062707 |
T |
|
| Q |
119 |
ttgtaacaataactttctccgcaacaagataagcagagtaaaaaccaacaccaaattgaccaatcatgctaacatcagccccagcttgcaatgcctccat |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45062708 |
tagtaacaataactttctccgcaacaagataagcagagtaaaaaccaacaccaaattgaccaatcatgctaacatcagccccagcttgcaatgcctccat |
45062807 |
T |
|
| Q |
219 |
gaattcctttgtaccagacctcgcaattgtacccaaattgttgaccaaatctgaaac |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45062808 |
gaattcctttgtaccagacctcgcaattgtacccaaattgttgaccaaatctgaaac |
45062864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 28646471 - 28646443
Alignment:
| Q |
88 |
caaatgtattgttcatcatcattgtgctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28646471 |
caaatgtattgttcatcatcattgtgctt |
28646443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 18620373 - 18620117
Alignment:
| Q |
19 |
gttcctctaccaagttgttcaccattaacatccctagtaacagtgaaagatccaccagcttgtgattcccaaatgtattgttcatcatcattgtgcttag |
118 |
Q |
| |
|
||||| ||||||||||||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
18620373 |
gttcccctaccaagttgttcaccatcagtatctcttgtaacagtgaaagaaccaccagcttgtgattcccaaatgtattgctcatcatcattgtgcttgg |
18620274 |
T |
|
| Q |
119 |
ttgtaacaataactttctccgcaacaagataagcagagtaaaaaccaacaccaaattgaccaatcatgctaacatcagccccagcttgcaatgcctccat |
218 |
Q |
| |
|
| || |||||||||||||| ||||| |||||||||||||| || || |||||||| |||||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
18620273 |
tggttacaataactttctcagcaaccagataagcagagtagaatcctacaccaaactgaccaatcatgctcacatcagcaccagcctgtaatgcctccat |
18620174 |
T |
|
| Q |
219 |
gaattcctttgtaccagacctcgcaattgtacccaaattgttgaccaaatctgaaac |
275 |
Q |
| |
|
||| |||||||| |||||||||||||| |||||||| ||||| ||||||||| |||| |
|
|
| T |
18620173 |
gaactcctttgttccagacctcgcaatagtacccaagttgttcaccaaatctaaaac |
18620117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 42166438 - 42166660
Alignment:
| Q |
49 |
tccctagtaacagtgaaagatccaccagcttgtgattcccaaatgtattgttcatcatcattgtgcttagttgtaacaataactttctccgcaacaagat |
148 |
Q |
| |
|
|||||||| |||||||| || || |||||||| || ||||| | || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| | |
|
|
| T |
42166438 |
tccctagtcacagtgaatgaccctccagcttgagactcccacacatactgttcatcatcgttgtgctttgtggtaacaataaccttctcggcaacaaggt |
42166537 |
T |
|
| Q |
149 |
aagcagagtaaaaaccaacaccaaattgaccaatcatgctaacatcagccccagcttgcaat-gcctccatgaattcctttgtaccagacctcgcaattg |
247 |
Q |
| |
|
| |||||||| |||||||||||||| || ||||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||||| ||||| | |
|
|
| T |
42166538 |
aggcagagtagaaaccaacaccaaactgtccaatcatgctcacatcagcaccagc-agctatggcttccatgaattccttggtaccagacctagcaatgg |
42166636 |
T |
|
| Q |
248 |
tacccaaattgttgaccaaatctg |
271 |
Q |
| |
|
|||| | ||||| |||||||||| |
|
|
| T |
42166637 |
tacctaggttgttcaccaaatctg |
42166660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 42177079 - 42177301
Alignment:
| Q |
49 |
tccctagtaacagtgaaagatccaccagcttgtgattcccaaatgtattgttcatcatcattgtgcttagttgtaacaataactttctccgcaacaagat |
148 |
Q |
| |
|
|||||||| |||||||| || || |||||||| || ||||| | || ||||||||||| |||||||| || ||||||||||| ||||| |||||||| | |
|
|
| T |
42177079 |
tccctagtcacagtgaatgaccctccagcttgagactcccacacatactgttcatcatcgttgtgctttgtggtaacaataaccttctcggcaacaaggt |
42177178 |
T |
|
| Q |
149 |
aagcagagtaaaaaccaacaccaaattgaccaatcatgctaacatcagccccagcttgcaat-gcctccatgaattcctttgtaccagacctcgcaattg |
247 |
Q |
| |
|
| |||||||| |||||||||||||| || ||||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||||| ||||| | |
|
|
| T |
42177179 |
aggcagagtagaaaccaacaccaaactgtccaatcatgctcacatcagcaccagc-agctatggcttccatgaattccttggtaccagacctagcaatgg |
42177277 |
T |
|
| Q |
248 |
tacccaaattgttgaccaaatctg |
271 |
Q |
| |
|
|||| | ||||| |||||||||| |
|
|
| T |
42177278 |
tacctaggttgttcaccaaatctg |
42177301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 207858 - 207813
Alignment:
| Q |
139 |
gcaacaagataagcagagtaaaaaccaacaccaaattgaccaatca |
184 |
Q |
| |
|
||||||||| | |||||||| || |||||||||||||||||||||| |
|
|
| T |
207858 |
gcaacaagaaatgcagagtagaatccaacaccaaattgaccaatca |
207813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University