View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12316_high_12 (Length: 296)

Name: NF12316_high_12
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12316_high_12
NF12316_high_12
[»] chr2 (13 HSPs)
chr2 (1-94)||(9079786-9079879)
chr2 (210-288)||(28102274-28102352)
chr2 (210-288)||(27968467-27968545)
chr2 (210-288)||(28092042-28092120)
chr2 (210-283)||(10493383-10493456)
chr2 (210-283)||(10849935-10850008)
chr2 (225-283)||(10518841-10518899)
chr2 (210-283)||(10507942-10508015)
chr2 (210-283)||(10545597-10545670)
chr2 (213-283)||(10463885-10463955)
chr2 (210-283)||(10475078-10475151)
chr2 (235-283)||(7478124-7478172)
chr2 (247-283)||(10489347-10489383)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9079879 - 9079786
Alignment:
Q  1 atcaaaccctaaaatgtaaaacaagaataaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079879 atcaaaccctaaaatgtaaaacaagaataaaacatatttgaatttgttctccaacttcatctcaaaacctgaggggtaatactggtcaatatta 9079786  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 28102352 - 28102274
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 288  Q
    ||||||||||| || ||||||||| || ||| | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28102352 ctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 27968467 - 27968545
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 288  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  27968467 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 28092120 - 28092042
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacaggttct 288  Q
    ||||||||||| || ||||||||| || ||  | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  28092120 ctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10493383 - 10493456
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||| || ||| ||||| |||||| | | |||||||||||||||||||||||||||||  |||||||    
T  10493383 ctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10849935 - 10850008
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||| || ||||||||| ||||||   | |||||||||||||||||||||||||||||  |||||||    
T  10849935 ctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 10518841 - 10518899
Alignment:
Q  225 tgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||| ||| |||| ||||||||||||||||||||| |||||||||  |||||||    
T  10518841 tgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10507942 - 10508015
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||| || ||||||||| ||||||  ||  ||||||||||||||||||||||| ||||  |||||||    
T  10507942 ctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10545597 - 10545670
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||| || ||| ||||| |||||  | |||||||||||||||||||||||||| |||| ||| ||||    
T  10545597 ctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 10463885 - 10463955
Alignment:
Q  213 aagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    |||||||| || ||||||||| ||| || | |||||||| |||||||||||||| ||||| | ||||||||    
T  10463885 aagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 10463955  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 10475078 - 10475151
Alignment:
Q  210 ctcaagatcagatgatgatatgggtttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||| || ||| ||||| ||||||  ||  |||||||| |||||||||||||||||||  |||||||    
T  10475078 ctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 7478172 - 7478124
Alignment:
Q  235 ttgtcaatacaaaaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    |||||| | |||||||||||||||||||||| ||||||||  |||||||    
T  7478172 ttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 10489347 - 10489383
Alignment:
Q  247 aaagcttcagcaagtttatcgtccacctttgacacag 283  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10489347 aaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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