View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_high_15 (Length: 259)
Name: NF12316_high_15
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 6894701 - 6894868
Alignment:
| Q |
77 |
gttaagtttgtttgagttcacattaattattttgttatcacactctattgtgcaatgattttacattttactatttcatggttgttttgttgtctatctt |
176 |
Q |
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| T |
6894701 |
gttaagtttgtttgagttcacattaattattttgttatcacactctattgtgcaatgattttacattttactatttcatggttgttttgttgtctatctt |
6894800 |
T |
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| Q |
177 |
attatagtttaagtttacttgatttgatattgtttttaattttacacttatttattcccttggtatta |
244 |
Q |
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| T |
6894801 |
attatagtttaagtttacttgatttgatattgtttttaattttacacttatttattcccttggtatta |
6894868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 6894630 - 6894674
Alignment:
| Q |
29 |
cacttttcaatcctcttcttgagacgacattaattgaagaattat |
73 |
Q |
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| T |
6894630 |
cacttttcaatcctcttcttgagacgacattaattgaagaattat |
6894674 |
T |
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