View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_high_4 (Length: 411)
Name: NF12316_high_4
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 36703919 - 36704280
Alignment:
| Q |
17 |
tgtgcaaatagaaaggcatcacgtgcattcagttttgttatcaaatagtaccatgaatttgcactatcaaatgtatgnnnnnnnnnnnnnnnnnnnaact |
116 |
Q |
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| T |
36703919 |
tgtgcaaatagaaaggcatcacgtgcattcagttttgttatcaaatagtactatgaatttgcactatcaaatg-atgttttttttt----------aact |
36704007 |
T |
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| Q |
117 |
tctttcgcttattatctcatgtaagaataacacaaaa-taatggttgtttaaaaatagtaaaccgcaatgaaagtgtgaggttagtgaaaaatggagaaa |
215 |
Q |
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| T |
36704008 |
tctttcgcttattatctcatgtaagaataacacaaaaataatggttgtttaaaaatagtaaaccgcaatgaaagtgtgaggttagtgaaaaatggagaaa |
36704107 |
T |
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| Q |
216 |
ttcaaccgatctatctaagttgaaaaaacaagacaacttttgtgattaaatatggagaagaataacacagtctatattctttttattttaattttgatgg |
315 |
Q |
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| T |
36704108 |
ttcgaccgatatatctaagttgaaaaaacaagacaacttttgtgattaaatatggagaagaataacacagtctatattctttttattttaattttgatgg |
36704207 |
T |
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| Q |
316 |
aaatctaacatactcagttgagnnnnnnnncactcgaatgaatctcaactaaatgaaaaaactactcctatat |
388 |
Q |
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| T |
36704208 |
aaatctaacatactcagttgagaaaaaaaacactcgaatgaatctcaactaaatgaaaaaactactcctatat |
36704280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 36711358 - 36711398
Alignment:
| Q |
291 |
attctttttattttaattttgatggaaatctaacatactca |
331 |
Q |
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| T |
36711358 |
attctttttgttttaattttgacggaaatctaacatactca |
36711398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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