View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12316_low_11 (Length: 302)
Name: NF12316_low_11
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 48092056 - 48092344
Alignment:
| Q |
9 |
agcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagtactcatcactcttggaggaaatgattttgtgaataa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48092056 |
agcagagagtgagtggtcttattggacctgaacaaactcagagcttagtgaatggagcattagtactcatcactcttggaggaaatgattttgtgaataa |
48092155 |
T |
|
| Q |
109 |
ctattacttagtgccattctctgcaagatcacgccaatacaatttaccggattatgtcagatatataatatctgaatataagaagattttgagggtaaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48092156 |
ctattacttagtgccattctctgcaagatcacgccaatacaatttaccggattatgtcagatatataatatctgaatataagaagattttgagggtaaat |
48092255 |
T |
|
| Q |
209 |
tactctctttttcattgcatgtgatccatt----------atttgatttgatttatttcacggtcaaattatataaataattggttagt |
287 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48092256 |
tactctctttttcatagcatgtgatccattatttgatttgatttgatttgatttatttcacggtcaaattatataaataattggttagt |
48092344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University