View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12316_low_12 (Length: 300)

Name: NF12316_low_12
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12316_low_12
NF12316_low_12
[»] chr8 (1 HSPs)
chr8 (17-284)||(44728692-44728959)
[»] chr1 (2 HSPs)
chr1 (173-284)||(12634254-12634367)
chr1 (156-233)||(42263737-42263817)
[»] chr5 (2 HSPs)
chr5 (156-259)||(28274091-28274197)
chr5 (156-259)||(28270851-28270957)
[»] chr7 (2 HSPs)
chr7 (209-283)||(23757365-23757439)
chr7 (156-271)||(20462435-20462553)
[»] chr3 (2 HSPs)
chr3 (155-206)||(8433158-8433209)
chr3 (237-281)||(34302689-34302733)
[»] chr4 (1 HSPs)
chr4 (172-208)||(965369-965405)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 44728692 - 44728959
Alignment:
Q  17 cacatgtaccttccaattgcatcaatggagtaacaactaatctagcttgcataggaagtgtcgcatcaagatcaggcgtatcaaaaagtgttggtaatgt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44728692 cacatgtaccttccaattgcatcaatggagtaacaactaatctagcttgcataggaagtgtcgcatcaggatcaggcgtatcaaaaagtgttggtaatgt 44728791  T
Q  117 ttaaagtacacccgttcattggagatagagtgtgcatcatgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaatagacttttagt 216  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44728792 ttaaagtacacccattaattggagctagagtgtgcatcatgtgagaagaattcccaaaatataaatttgaaaagttgcaatggttgaatagacttttagt 44728891  T
Q  217 gaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatgacaaaactctttca 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44728892 gaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatgacgaaactctttca 44728959  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 12634254 - 12634367
Alignment:
Q  173 aaatataaatttgaaaagtagcaatggttgaataga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatg 270  Q
    ||||||||||||||||| | |||||| || ||||||  |||||| ||||||||| || || || | |||||||||||||||| |||||||||||||||||    
T  12634254 aaatataaatttgaaaaattgcaatgattaaatagagacttttaatgaaaggatataatgtttgactattgaagcaatgtaaccattgtgtctattcatg 12634353  T
Q  271 acaaaactctttca 284  Q
    |  |||||||||||    
T  12634354 aagaaactctttca 12634367  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 42263817 - 42263737
Alignment:
Q  156 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaataga---cttttagtgaaaggatgtattgctt 233  Q
    ||||| ||||||| |||||||||||||||||||||| |||||| |||||||||    ||| ||||||| ||||||||||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagagacatttaagtgaaaagatgtattgctt 42263737  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 28274197 - 28274091
Alignment:
Q  156 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata-ga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 252  Q
    |||||||| || | |||||||||||||||| ||||| |||||||||||||| ||  |||||||||||| |||||||||||| | ||||||| ||||||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaatatgaaccttttagtgaaacgatgtattgcttgactattgaaacaatgtaa 28274098  T
Q  253 tcattgt 259  Q
     ||||||    
T  28274097 ccattgt 28274091  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 28270957 - 28270851
Alignment:
Q  156 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata-ga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 252  Q
    |||||||| || | |||||||||||||||||||||| |||||| ||||||| ||  |||| ||||||| |||||||||||| | ||||||| ||||||||    
T  28270957 tgtgagagaaacttccaaaatataaatttgaaaagttgcaatgattgaatatgaacctttcagtgaaatgatgtattgcttgactattgaaacaatgtaa 28270858  T
Q  253 tcattgt 259  Q
     ||||||    
T  28270857 ccattgt 28270851  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 23757439 - 23757365
Alignment:
Q  209 cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatgacaaaactctttc 283  Q
    |||| |||||||||||||| ||||| | | |||||||||||||| |||||||||||||||| |  ||||||||||    
T  23757439 ctttcagtgaaaggatgtaatgcttgattcttgaagcaatgtaaccattgtgtctattcataaagaaactctttc 23757365  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 20462435 - 20462553
Alignment:
Q  156 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaataga---cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 252  Q
    |||||||| |||| |||||| ||||||||||||||||  |||  ||||||| |   |||| ||||||| |||| | ||||| | ||||| | ||||||||    
T  20462435 tgtgagagaaatttccaaaaaataaatttgaaaagtatgaatatttgaataaagacctttaagtgaaaagatgcaatgcttgactattggaccaatgtaa 20462534  T
Q  253 tcattgtgtctattcatga 271  Q
     |||| |||| ||||||||    
T  20462535 ccattatgtcaattcatga 20462553  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 8433209 - 8433158
Alignment:
Q  155 atgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata 206  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||    
T  8433209 atgtgagaggaatttccaaaatataaacttgaaaagttgcaatggttaaata 8433158  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 34302689 - 34302733
Alignment:
Q  237 tattgaagcaatgtaatcattgtgtctattcatgacaaaactctt 281  Q
    |||||||||||||||| ||||||||||||| ||||  ||||||||    
T  34302689 tattgaagcaatgtaaccattgtgtctatttatgaagaaactctt 34302733  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 965369 - 965405
Alignment:
Q  172 aaaatataaatttgaaaagtagcaatggttgaataga 208  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  965369 aaaatataaatttgaaaagttgcaatggttaaataga 965405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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