View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12316_low_15 (Length: 263)
Name: NF12316_low_15
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_15 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 2632127 - 2631876
Alignment:
| Q |
9 |
ctgtgcagtagcaaagctgactggttgaaaataaaatacacaagtttttccatttcaagtgcagtgatggttggtaaataaaactttcaataactacaag |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2632127 |
ctgtgaagtagcaaagctgactggttgaaaataaaatacacaagtttttccatttcaagtgcagtgatggttggtaaataaaactttcaataactacaag |
2632028 |
T |
|
| Q |
109 |
aaatactaaaaattatcctggctcatgatgaaaggatgaatttctttcaaaattttggattcatacggttatacatctannnnnnnnnnnnnnnnnaata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2632027 |
aaatactaaaaattatcctggctcatgatgaaaggatgaatttctttcaaaattttggattcatacggttatacatcta---tagtagtagtagtaaata |
2631931 |
T |
|
| Q |
209 |
tattaatttttcaactcgcactacacctgtattgtacgtataaaatagatagatc |
263 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631930 |
tattaatttttcaaatcgcactacacctgtattgtacgtataaaatagatagatc |
2631876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University