View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_low_16 (Length: 259)
Name: NF12316_low_16
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 2923094 - 2922864
Alignment:
| Q |
20 |
aggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctgtatctgaaaaataaacagatgcacaac |
119 |
Q |
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| T |
2923094 |
aggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctgtatctgaaaaataaacagatgcacaac |
2922995 |
T |
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| Q |
120 |
attgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactcaaaacagcactttccaaagtggattctc |
219 |
Q |
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| T |
2922994 |
attgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactcaaaacagcactttccaaagtggattctc |
2922895 |
T |
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| Q |
220 |
agatgaaatttctccctgctactgcacaggt |
250 |
Q |
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| T |
2922894 |
agatgaaatttctccctgctactgcacaggt |
2922864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 36127971 - 36128201
Alignment:
| Q |
20 |
aggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctgtatctgaaaaataaacagatgcacaac |
119 |
Q |
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|||||||||||| ||||||||||||| ||||| ||| |||||||||||| | | || |||||||| ||||| ||||| || |||||||||||||| | |
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| T |
36127971 |
aggaacacttacactcaaagaatttcaggaggtaatgaatgacatctgtgaaaggtaccctcaggtggagctatatctaaagaataaacagatgcatggc |
36128070 |
T |
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| Q |
120 |
attgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactcaaaacagcactttccaaagtggattctc |
219 |
Q |
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| T |
36128071 |
attgctgatctgttgaaggaatccaagggagatgttaaaaaagaatctattgaactcaatatcgaagaactcaagaccgctttttccaatgtggactccg |
36128170 |
T |
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| Q |
220 |
agatgaaatttctccctgctactgcacaggt |
250 |
Q |
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| T |
36128171 |
agatgaaatttctccctgctacagctcaggt |
36128201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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