View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12316_low_18 (Length: 257)
Name: NF12316_low_18
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 32203438 - 32203208
Alignment:
| Q |
1 |
gtccgctgtttcgatctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203438 |
gtccgctgtttcgatctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctga |
32203339 |
T |
|
| Q |
101 |
taagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32203338 |
taagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaagg |
32203239 |
T |
|
| Q |
201 |
aattcaggtacttgatacacagaggttaatt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32203238 |
aattcaggtacttgatacacagaggttaatt |
32203208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 35566554 - 35566784
Alignment:
| Q |
1 |
gtccgctgtttcgatctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566554 |
gtccgctgtttcgatctaccacatttgcagtaatgtactttattgatatgaacaatctcagcacataccgtttcgttaaagtcattcttcaatcatctga |
35566653 |
T |
|
| Q |
101 |
taagtgggtttaaaatcaagcacataaatgataaatcagtttcctacaaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35566654 |
taagtgggtttaaaatcaagcacataaatgataaatcagtttcctacgaacagaaaggaaaaaacaatgacagaataggtaatgtcccacatattaaagg |
35566753 |
T |
|
| Q |
201 |
aattcaggtacttgatacacagaggttaatt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35566754 |
aattcaggtacttgatacacagaggttaatt |
35566784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University