View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_low_19 (Length: 252)
Name: NF12316_low_19
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 42027901 - 42027977
Alignment:
| Q |
6 |
aggagcagagacactgtaaatccgcccaaaaaacagacacactgtaaacccacgtggatgacctgtagcattcaacc |
82 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42027901 |
aggaacagacacactgtaaattcgcccaaaaaacagacacactgtaaacccacgtggatgacctgtagcattcaacc |
42027977 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 42028124 - 42028161
Alignment:
| Q |
197 |
gtgtcctaaaataaataaaagacgtcgtggcgcgtaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42028124 |
gtgtcctaaaataaataaaagacgtcgtggcgcgtaac |
42028161 |
T |
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