View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_low_21 (Length: 246)
Name: NF12316_low_21
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1046529 - 1046303
Alignment:
| Q |
1 |
taaataggtagtggagagatacatcatacatgtacaaccaatcaatataaagaaatatatattcatgcataggagataaatgaatctaaaaactaggtga |
100 |
Q |
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| T |
1046529 |
taaataggtagtggagagatacatcatacatgtacaaccaatcaatataaagaaatatatatccatgcataggagataaatgaatttaaaaactaggtga |
1046430 |
T |
|
| Q |
101 |
atcattaaaaagaaccaagcaattgagctcaaatggttaatgagtttcatcaaaggatgcattgtttagtagaatcgagttcgatttctagatgtaacaa |
200 |
Q |
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| T |
1046429 |
atcattaaagagaaccaagcaattgagctcaaatggttagtgagtttcatcaaaggatacattgttcagtagaatcgagttcgatttctagatgtaacaa |
1046330 |
T |
|
| Q |
201 |
ttcttagctaggttatacttatgtcac |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
1046329 |
ttcttagctaggttatacttatgtcac |
1046303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 1949054 - 1948980
Alignment:
| Q |
129 |
tcaaatggttaatgagtttcatcaaaggatgcattgtttagtagaatc-gagttcgatttctagatgtaacaatt |
202 |
Q |
| |
|
|||||||||||||||| |||| ||||||| | ||||||||| |||| | |||||||||||||||| ||||||| |
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| T |
1949054 |
tcaaatggttaatgagcttcaacaaaggacgaattgtttagaagaacctcagttcgatttctagatcgaacaatt |
1948980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 980608 - 980648
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttcatcaa |
153 |
Q |
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| T |
980608 |
aaccaagcaattgagttcaaatgataaatgagtttcatcaa |
980648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 26172728 - 26172768
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttcatcaa |
153 |
Q |
| |
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||||||| ||||||| |||| |||||||||||||||||||| |
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|
| T |
26172728 |
aaccaagtaattgagttcaagtggttaatgagtttcatcaa |
26172768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 13043552 - 13043512
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttcatcaa |
153 |
Q |
| |
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|
| T |
13043552 |
aaccaagcaattgagctcaagtggttaatgagtttcatcaa |
13043512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 38580839 - 38580875
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttca |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
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|
| T |
38580839 |
aaccaagcaattgagttcaaatggttaatgagtttca |
38580875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 38021442 - 38021472
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatga |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
38021442 |
aaccaagcaattgagctcaaatggttaatga |
38021472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 4061507 - 4061471
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttca |
149 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |
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|
| T |
4061507 |
aaccaaacaattgagctcaattggttaatgagtttca |
4061471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 33704268 - 33704226
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttcatcaaag |
155 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||| |
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|
| T |
33704268 |
aaccaagcaattgagctcaagtggtaaatgagcttcatcaaag |
33704226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 19178699 - 19178735
Alignment:
| Q |
113 |
aaccaagcaattgagctcaaatggttaatgagtttca |
149 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |
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|
| T |
19178699 |
aaccaagcaattgagctcaagtggttaataagtttca |
19178735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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