View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12316_low_6 (Length: 376)
Name: NF12316_low_6
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 43311845 - 43311501
Alignment:
| Q |
14 |
cctgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttctta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311845 |
cctgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttctta |
43311746 |
T |
|
| Q |
114 |
gatcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttgga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43311745 |
gatcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgtggttgga |
43311646 |
T |
|
| Q |
214 |
attcgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaa |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311645 |
attcgactctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaa |
43311546 |
T |
|
| Q |
314 |
gatgggtgtggagattgcagtggattataggatggagtacgatgt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311545 |
gatgggtgtggagattgcagtggattataggatggagtacgatgt |
43311501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 39487325 - 39487651
Alignment:
| Q |
16 |
tgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttaga |
115 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| ||||| | | ||||||||| ||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
39487325 |
tgtggtctctgcgtaaaccctcaccgaagggaatcatggtttcaccctctgattaccctctttctgatttggaatcggttttacctgaaggattcttaga |
39487424 |
T |
|
| Q |
116 |
tcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaat |
215 |
Q |
| |
|
||||||| | ||| ||||||||| ||||||||||| | |||| |||| |||| ||||||||||| || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
39487425 |
tcgaacaacagggattggaagggtaattggatgggcccaacaggcccaaatactagctcatccagccactggaggatttgtttcgcattgtggttggaat |
39487524 |
T |
|
| Q |
216 |
tcgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaaga |
315 |
Q |
| |
|
|| | |||||||||||||||| |||||||||||||||| | |||||||||| |||||| ||||| | ||||||||| || | |||| ||| ||||| | |
|
|
| T |
39487525 |
tcaacactcgagagcatatattttggtgtgcctattgccgcgtggccactctatgctgagcaacaggctaatgcttttgaattggtgtgtgaactgaaaa |
39487624 |
T |
|
| Q |
316 |
tgggtgtggagattgcagtggattata |
342 |
Q |
| |
|
| |||||||| ||||| ||||||||| |
|
|
| T |
39487625 |
taggtgtggaaattgctttggattata |
39487651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 351
Target Start/End: Original strand, 39484170 - 39484460
Alignment:
| Q |
63 |
tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc |
162 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||||||||| |||||||||||||| || || ||||||| | ||| ||||||| | || | || |
|
|
| T |
39484170 |
tctgattactctctttatgatttgggtccggttttacctgaaggattcttagatcgaactgccgagattggaaggataattagatgggcccaacaagccc |
39484269 |
T |
|
| Q |
163 |
aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc |
262 |
Q |
| |
|
|| |||| || || ||||| | |||||| ||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39484270 |
aaatactagcccacccagccataggaggatttgtttcacattatggttggaattcaacactcgagagcatatattttggtgtgcctattgccgcatggcc |
39484369 |
T |
|
| Q |
263 |
actctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagat--gggtgtggagattgcagtggattataggatggagt |
351 |
Q |
| |
|
|||||||| ||| ||||| | ||||||||| || | |||| ||||||| |||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
39484370 |
actctttgttgaacaacaggctaatgcttttgaattggtgtgtgagctgcagataggtgtgtggagattgcattggattataggatggagt |
39484460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 330
Target Start/End: Original strand, 39461160 - 39461427
Alignment:
| Q |
63 |
tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc |
162 |
Q |
| |
|
||||||||||||||| |||| |||| | |||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||| ||| | |
|
|
| T |
39461160 |
tctgattactctcttactgaattgggcttggttttacccgaagggttcttagatcggacagcagggattggaagggtcattggatgggctccgcagactc |
39461259 |
T |
|
| Q |
163 |
aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc |
262 |
Q |
| |
|
|| || | || || ||||| || ||||| || ||||| ||||| || |||||||| || ||||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
39461260 |
aaatattggcccacccagccacgggaggattcgtttcccattgtggctggaattcaatactcgagagcatgtattttggtgtgcccattgccacgtggcc |
39461359 |
T |
|
| Q |
263 |
actctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagatgggtgtggagattg |
330 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
39461360 |
gctctttgctgaacaacagactaatgcttttcagttggtgcatgagctgaagatggctgtggagattg |
39461427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 39476372 - 39476707
Alignment:
| Q |
16 |
tgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttaga |
115 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||| || |||| || | || |||||| |||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
39476372 |
tgtggtctctgcgtaaacctccagcaaagggcactatggctgcaccctcggattaccctctttatgatttgggtctggttttacctgaaggattcttaga |
39476471 |
T |
|
| Q |
116 |
tcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaat |
215 |
Q |
| |
|
| |||| ||| || ||||||| | |||||||||| | |||| |||| |||| || || ||||| | |||||| |||||||||||||| ||||||||| |
|
|
| T |
39476472 |
tagaactgctgagattggaaggatagttggatgggcccaacaggcccaaatactagcccacccagccataggaggatttgtttcacattgtggttggaat |
39476571 |
T |
|
| Q |
216 |
tcgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaaga |
315 |
Q |
| |
|
|| | |||||||||||||||| |||||| || |||||| ||||||||||||||||||| ||||| | ||||||||| || | |||| ||||||||||| |
|
|
| T |
39476572 |
tcaacactcgagagcatatattttggtgtaccaattgccgcatggccactctttgctgaacaacaggctaatgcttttgaattggtgtgtgagctgaaga |
39476671 |
T |
|
| Q |
316 |
tgggtgtggagattgcagtggattataggatggagt |
351 |
Q |
| |
|
| |||||||| || ||| ||||||||||| |||||| |
|
|
| T |
39476672 |
taggtgtggatatcgcattggattatagggtggagt |
39476707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 39457608 - 39457280
Alignment:
| Q |
16 |
tgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttaga |
115 |
Q |
| |
|
|||||||||| || ||||| |||||||||| |||||| || | ||||||||||| |||||||||||||| | |||||||| ||||| |||||||| |
|
|
| T |
39457608 |
tgtggtctctacgtaaaccaccaccgaaggacaccatgaatgcgccatctgattacactctttctgatttgagttcggttttaccagaaggattcttaga |
39457509 |
T |
|
| Q |
116 |
tcgaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaat |
215 |
Q |
| |
|
| | ||||| || ||||||||| ||||||||||| || ||| || |||| || || ||||| || ||||| |||||||| ||||| || |||||| |
|
|
| T |
39457508 |
taggacagcagagattggaagggttattggatgggccccacagacgcacatactagcccacccagccacgggaggatttgtttctcattgtggctggaat |
39457409 |
T |
|
| Q |
216 |
tcgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaaga |
315 |
Q |
| |
|
|| | ||||||| |||||||| |||||||||| ||||||| ||||| |||||||||||||| || || ||||| |||||| | || | ||||||||||| |
|
|
| T |
39457408 |
tccacactcgagaacatatattttggtgtgcctgttgccacgtggccgctctttgctgatcagcagacaaatgcatttcaattggtatgtgagctgaaga |
39457309 |
T |
|
| Q |
316 |
tgggtgtggagattgcagtggattatagg |
344 |
Q |
| |
|
||| ||||||||||||| | ||||||||| |
|
|
| T |
39457308 |
tggctgtggagattgcattagattatagg |
39457280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 352
Target Start/End: Original strand, 39455535 - 39455824
Alignment:
| Q |
63 |
tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc |
162 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||| ||||| ||||||||||| || || || ||||||||| ||||| |||||||| || || |
|
|
| T |
39455535 |
tctgattacactctttctgatttgtgttcgattttacccgaaggattcttagatcgtacggcagagattggaagggtgattggttgggctccacaaaccc |
39455634 |
T |
|
| Q |
163 |
aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc |
262 |
Q |
| |
|
|| |||| || |||||||| |||||||| |||||||||||||| ||||||||||| | |||||| ||||||| | ||||||||| ||||| |||||||| |
|
|
| T |
39455635 |
aaatactagcccatccagccacaggaggatttgtttcacattgtggttggaattccacactcgagggcatatactttggtgtgcccattgcaacatggcc |
39455734 |
T |
|
| Q |
263 |
actctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagatgggtgtggagattgcagtggattataggatggagta |
352 |
Q |
| |
|
||||||||||| ||||| | ||||||| || | |||| |||||||||||| | |||||||||||| | ||||||||| ||||||| |
|
|
| T |
39455735 |
gctctttgctgaacaacaggttactgcttttgaattggtgtgtgagctgaagattgctgtggagattgcgctagattatagggtggagta |
39455824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 39463868 - 39463546
Alignment:
| Q |
18 |
tggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatc |
117 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||||| | | |||||||| ||||| |||||| ||| |
|
|
| T |
39463868 |
tggtctctacgtaaacccccaccaaagggcgccatgattgcgccatctgattaccctctttctgatttaggttccgttttacccgaaggattcttatatc |
39463769 |
T |
|
| Q |
118 |
gaacagctag-gactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaatt |
216 |
Q |
| |
|
| || | ||| || ||||||||| ||||| |||||||| |||| |||| |||| || || || || || ||||| ||||| |||||||| || ||||||| |
|
|
| T |
39463768 |
ggactg-tagagattggaagggtgattggttgggctccacaggcccaaatactagcccacccggccacgggaggatttgtctcacattgtggctggaatt |
39463670 |
T |
|
| Q |
217 |
cgattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagat |
316 |
Q |
| |
|
||| || ||||||||||||| |||||| || ||||||| ||||| |||||||||| ||||| || ||||||||| |||| |||| |||| | ||||| |
|
|
| T |
39463669 |
cgacactggagagcatatattttggtgttccacttgccacttggccgatctttgctgaacaacagacaaatgcttttgaactggtgtgtgagttaaagat |
39463570 |
T |
|
| Q |
317 |
gggtgtggagattgcagtggatta |
340 |
Q |
| |
|
|| ||||||||| || ||||||| |
|
|
| T |
39463569 |
ggcggtggagatttcattggatta |
39463546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 351
Target Start/End: Original strand, 39451907 - 39452195
Alignment:
| Q |
63 |
tctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatcgaacagctaggactggaagggtcattggatgggctcctcaggtcc |
162 |
Q |
| |
|
||||||||| ||||||||||| || | |||||||| ||||| |||||||||||||| | || ||||||||| ||||| ||||| || || | || |
|
|
| T |
39451907 |
tctgattacactctttctgatctgtgttcggttttaccagaaggattcttagatcgaacggaagagattggaagggtgattggttgggccccacaagccc |
39452006 |
T |
|
| Q |
163 |
aagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattcgattctcgagagcatatattatggtgtgcctattgccacatggcc |
262 |
Q |
| |
|
|| |||| || |||||||| | |||||| |||||||||||||| || |||||||| | |||||||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
39452007 |
aaatactagcacatccagccataggaggatttgtttcacattgtggctggaattccacactcgagagcatatattttggtgtgcccattgcaacatggcc |
39452106 |
T |
|
| Q |
263 |
actctttgctgatcaacaaaccaatgcttttcaacttgtgtctgagctgaagatgggtgtggagattgcagtggattataggatggagt |
351 |
Q |
| |
|
||||||||||| ||||| ||||||||| || | |||| |||| ||||||| ||||||||||| | ||||||||| |||||| |
|
|
| T |
39452107 |
gctctttgctgagcaacaggttaatgcttttgaattggtgtgtgagttgaagatttccgtggagattgcgttagattatagggtggagt |
39452195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 39472892 - 39473167
Alignment:
| Q |
18 |
tggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttagatc |
117 |
Q |
| |
|
|||||||| || ||||| |||||| |||| ||||||| | | ||||||||| |||||| |||||||| || |||||| ||||| || ||||| | |
|
|
| T |
39472892 |
tggtctcttcgtaaacctccaccggagggcaccatggcctcgccctctgattaccctctttttgatttgggttcaagtttacccgaaggatttttagagc |
39472991 |
T |
|
| Q |
118 |
gaacagctaggactggaagggtcattggatgggctcctcaggtccaagtactcgctcatccagcaacaggaggctttgtttcacattgcggttggaattc |
217 |
Q |
| |
|
| ||||| || ||||||||| |||||||||| || || |||||| |||| || || ||||| | ||||| |||| ||| ||||| ||||||||||| |
|
|
| T |
39472992 |
ggacagcagagattggaagggttgttggatgggccccacaagtccaaatactagcccacccagccattggaggatttgcttcgcattgtggttggaattc |
39473091 |
T |
|
| Q |
218 |
gattctcgagagcatatattatggtgtgcctattgccacatggccactctttgctgatcaacaaaccaatgctttt |
293 |
Q |
| |
|
| ||||||||||| |||| |||||||||||| ||| |||||||||| | ||| || ||||| || ||||||||| |
|
|
| T |
39473092 |
agtactcgagagcatttattttggtgtgcctatagccgcatggccactttatgcagaacaacagactaatgctttt |
39473167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 39470073 - 39469935
Alignment:
| Q |
16 |
tgtggtctctgcgaaaacccccaccgaagggaaccatgggtgagacatctgattactctctttctgatttggtcgcagttttacctgaagggttcttaga |
115 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||| ||||||| || | ||||||||||| |||||||||||||| | |||||||| ||||| |||||||| |
|
|
| T |
39470073 |
tgtggtctctacgtaaaccaccacctaagggcaccatggttgcgccatctgattaccctctttctgatttgagttcggttttaccagaaggattcttaga |
39469974 |
T |
|
| Q |
116 |
tcgaacagctaggactggaagggtcattggatgggctcc |
154 |
Q |
| |
|
| | |||| || ||||||||| |||||||||||||| |
|
|
| T |
39469973 |
taggacagaagagattggaagggttattggatgggctcc |
39469935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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