View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12316_low_7 (Length: 339)
Name: NF12316_low_7
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12316_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 38420507 - 38420817
Alignment:
| Q |
18 |
atattaaatataaaaaagtttcaattcaacttcttacttgaaaagatacgtgcattatttctcaataatgcatgttaaggtcatgaatacaaacaaatag |
117 |
Q |
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| T |
38420507 |
atattaaatataaaaaagtttcaattcaacttctcacttgaaaagatacgtgcattatttctcaataatgcatgtttaggtcatgaatacaaacaaatag |
38420606 |
T |
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| Q |
118 |
tacatgaaaaacaaaactag----aaagactaaacttcattcgttgttatcacaagcgataagaacgaaaacatagtaaaaagaaaaacaacatacgtaa |
213 |
Q |
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| T |
38420607 |
tacatgaaaaacaaa-caagggacaaagactaaacttcattcgttgttatcacaagcgataagaacgaaaacatagtaaaaagaaaaacaacatacgtaa |
38420705 |
T |
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| Q |
214 |
aattggaagtgataagttatctatcctatgtaaaagtggaccctaatggcaatcaagaatagacaaacaagaccaaagtagaggagagagtgaacaacta |
313 |
Q |
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| T |
38420706 |
aattggaagtgataagttatctatcctatgtaaaagtggaccctaatggcaatcaagaatagacaaacaagaccaaagtagaggagagagtgaacaacta |
38420805 |
T |
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| Q |
314 |
tggcagcagcac |
325 |
Q |
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| T |
38420806 |
tggcagcagcac |
38420817 |
T |
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