View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12316_low_8 (Length: 338)

Name: NF12316_low_8
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12316_low_8
NF12316_low_8
[»] chr7 (5 HSPs)
chr7 (86-330)||(21410406-21410647)
chr7 (17-77)||(21410666-21410726)
chr7 (17-76)||(9183148-9183207)
chr7 (18-71)||(41519072-41519125)
chr7 (39-76)||(43663052-43663089)
[»] chr6 (1 HSPs)
chr6 (18-76)||(28363998-28364056)
[»] chr1 (2 HSPs)
chr1 (18-74)||(9879499-9879555)
chr1 (19-76)||(48619166-48619223)
[»] chr8 (3 HSPs)
chr8 (18-76)||(43968955-43969013)
chr8 (19-75)||(7140771-7140826)
chr8 (36-76)||(34797916-34797956)
[»] chr2 (1 HSPs)
chr2 (18-76)||(28846752-28846810)
[»] chr5 (1 HSPs)
chr5 (43-76)||(19949573-19949606)
[»] chr3 (1 HSPs)
chr3 (39-76)||(17035068-17035105)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 86 - 330
Target Start/End: Complemental strand, 21410647 - 21410406
Alignment:
Q  86 tctccggttgttggatgtacagtatatgtggaattgagtccaaaatttacactaggcatgaggaggttgaatattgaatttgtattgaagtctcactttg 185  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  21410647 tctctggttgttggatgtacaatatatgtggaattgagtccaaaatttacactaggcatgagg---ttgaatattgaatttgtattgaagtctcactttg 21410551  T
Q  186 ttaaaattttcaaatggttgaatgtacatatgacttttaggtaccatcatcctttgagatggtttttgagagtgagatttaaattcatttaaaatgttat 285  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21410550 ttaaaattttcaagtggttgaatgtacatatgacttttaggtaccatcatcctttgagatggcttttgagagtgagattcaaattcatttaaaatgttat 21410451  T
Q  286 tataatcgaattaaggatgacaatatggaaataagacacaggttc 330  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  21410450 tatagtcgaattaaggatgacaatatggaaataagacacaggttc 21410406  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 21410726 - 21410666
Alignment:
Q  17 agtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaac 77  Q
    ||||||| ||||||||||||||| | ||||||||| |||||||||||| |||| |||||||    
T  21410726 agtctcaaattcgattatgtctgatgtcaatttggatagactaatttagcttcgtcaaaac 21410666  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 9183207 - 9183148
Alignment:
Q  17 agtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    |||||||| ||||||||| |||||| ||||||||||| | ||||||||  ||||||||||    
T  9183207 agtctcaggttcgattatctctggtgtcaatttgggtgggctaatttagtttcttcaaaa 9183148  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 41519125 - 41519072
Alignment:
Q  18 gtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttctt 71  Q
    ||||||||||||||||| || ||| ||||||||||| | |||||||| ||||||    
T  41519125 gtctcagattcgattatctccggtgtcaatttgggtgggctaatttagcttctt 41519072  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 43663089 - 43663052
Alignment:
Q  39 ggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  43663089 ggtatcaatttgggtggactaatttagcttcttcaaaa 43663052  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28363998 - 28364056
Alignment:
Q  18 gtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||||||||||||| |||||| ||||||||| | | ||||||||| ||||||||||    
T  28363998 gtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttcttcaaaa 28364056  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 9879499 - 9879555
Alignment:
Q  18 gtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaa 74  Q
    ||||||||||||||||| |||  | ||||||||||| | ||||||||||||||||||    
T  9879499 gtctcagattcgattatctcttatgtcaatttgggtgggctaatttaacttcttcaa 9879555  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 48619223 - 48619166
Alignment:
Q  19 tctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    |||||| ||| ||||| || ||| |||||||| || ||||||||||||||||||||||    
T  48619223 tctcaggttctattatctccggtgtcaatttgagtggactaatttaacttcttcaaaa 48619166  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 43969013 - 43968955
Alignment:
Q  18 gtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||||||||||||| |||||| | ||||| ||| |||||||||| |||||| ||||    
T  43969013 gtctcagattcgattatctctggtgttaatttaggtggactaatttatcttcttaaaaa 43968955  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7140771 - 7140826
Alignment:
Q  19 tctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaa 75  Q
    |||||||||||||| | || ||||||||||||||| | |||||||| ||||||||||    
T  7140771 tctcagattcgattctctc-ggtatcaatttgggtgggctaatttaccttcttcaaa 7140826  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 34797916 - 34797956
Alignment:
Q  36 tctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  34797916 tctggtatcaatttggataagctaatttaacttcttcaaaa 34797956  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 28846752 - 28846810
Alignment:
Q  18 gtctcagattcgattatgtctggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||| |||||||||  | | | ||||||||||||||||||||||||||||| ||||    
T  28846752 gtctcaggttcgattatcaccgatgtcaatttgggtagactaatttaacttcttaaaaa 28846810  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 19949606 - 19949573
Alignment:
Q  43 tcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||||| ||||||||||||||||||||||||    
T  19949606 tcaatttggatagactaatttaacttcttcaaaa 19949573  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 17035068 - 17035105
Alignment:
Q  39 ggtatcaatttgggtagactaatttaacttcttcaaaa 76  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  17035068 ggtatcaatttgggtggactaatttaacttcttaaaaa 17035105  T

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