View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12316_low_9 (Length: 327)

Name: NF12316_low_9
Description: NF12316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12316_low_9
NF12316_low_9
[»] chr1 (1 HSPs)
chr1 (24-319)||(52577183-52577478)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 52577478 - 52577183
Alignment:
Q  24 agaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaatta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52577478 agaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagttccaactgataattttgtttttctcatttgaaatta 52577379  T
Q  124 annnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttatttttcgtatgtaaacaacttattctctacagactgt 223  Q
    |       | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  52577378 atttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttatttttggtatgtaaacaacttattctctacagactgt 52577279  T
Q  224 gactgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatttaatttaattgccacaggttctgc 319  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  52577278 gacggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatcttgtgcatgtaatttaattgccacaagttctgc 52577183  T

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