View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12317_high_1 (Length: 451)
Name: NF12317_high_1
Description: NF12317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12317_high_1 |
 | |
|
| [»] scaffold0164 (2 HSPs) |
| |
|
| [»] scaffold0050 (2 HSPs) |
| |
|
| [»] scaffold0186 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0164 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 140 - 451
Target Start/End: Complemental strand, 4747 - 4436
Alignment:
| Q |
140 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgaaggtacatagttagaaccaacatcagcaaaaagttctaagatattctttttctt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4747 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgaaggtacatagttagaaccaacatcagcaaaaagttctaagatattctttttctt |
4648 |
T |
|
| Q |
240 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaacttgtaggagt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4647 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaacttgtaggagt |
4548 |
T |
|
| Q |
340 |
gtagagttaattccacaaacaccagatagatggggtaatgttattgaggatatgatgatgaagattaagcctcttccagaaccatgatggaatagagtaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4547 |
gtagagttaattccacaaacaccagatagatggggtaatgttattgaggatatgatgatgaagattaagcctcttccagaaccatgatggaatagtgtaa |
4448 |
T |
|
| Q |
440 |
aagctactagtg |
451 |
Q |
| |
|
||||||| |||| |
|
|
| T |
4447 |
aagctaccagtg |
4436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 11949 - 11888
Alignment:
| Q |
12 |
aagcagagacacttccttagtagcctaactcacactactactaaggatataaccatgttata |
73 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11949 |
aagcaaagacacttcctaagtagcctaactcacactactactaaggatataaccatgttata |
11888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 140 - 451
Target Start/End: Complemental strand, 68336 - 68024
Alignment:
| Q |
140 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgaaggtacatagttagaaccaacatcagcaaaaagttctaagatattctttttctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
68336 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgtaggtacagagttagaaccaacatcagcaacaagttctaagatattctttttctt |
68237 |
T |
|
| Q |
240 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaacttgtaggagt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
68236 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaactagcaggagt |
68137 |
T |
|
| Q |
340 |
gtagagttaattccacaaacaccagatagatggggtaatgttattgaggatatgatgatgaagattaagcctcttccagaaccatgatggaatag-agta |
438 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
68136 |
gtagagttaattccacaaacaccagatagttggggtaatgttattgaggatatgatgatgaagattaagcctcttccagagccatgatggaatagaagta |
68037 |
T |
|
| Q |
439 |
aaagctactagtg |
451 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
68036 |
aaagctaccagtg |
68024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 68465 - 68402
Alignment:
| Q |
12 |
aagcagagacacttccttagtagcctaactcacactactactaaggatataaccatgttatatt |
75 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
68465 |
aagcaaagacacttccgaagtagcctagctcacactgctaccaaggatataaccatgctatatt |
68402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 140 - 407
Target Start/End: Complemental strand, 31003 - 30736
Alignment:
| Q |
140 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgaaggtacatagttagaaccaacatcagcaaaaagttctaagatattctttttctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31003 |
gacttcaatgagaaatattagagggaatatgtgttttggatcttgtaggtacagagttagaaccaacatcagcaacaagttctaagatattctttttctt |
30904 |
T |
|
| Q |
240 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaacttgtaggagt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30903 |
agtcttggttccagtgaggacattggggctttattaagtatacttcatccatgcaagagaaggccacacattgagctttattaagtaaactagtaggagt |
30804 |
T |
|
| Q |
340 |
gtagagttaattccacaaacaccagatagatggggtaatgttattgaggatatgatgatgaagattaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30803 |
gtagagttaattccacaaacaccagatagttggggtaatgttattgaggatatgatgatgaagattaa |
30736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 31132 - 31069
Alignment:
| Q |
12 |
aagcagagacacttccttagtagcctaactcacactactactaaggatataaccatgttatatt |
75 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
31132 |
aagcaaagacacttcctaaatagcctaactcacactgctactaaggatagaaccatgctatatt |
31069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 6631073 - 6631118
Alignment:
| Q |
380 |
ttattgaggatatgatgatgaagattaagcctcttccagaaccatg |
425 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
6631073 |
ttattgagtatatgatgatgaagatcaagtctcttccaaaaccatg |
6631118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University