View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12317_high_6 (Length: 301)

Name: NF12317_high_6
Description: NF12317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12317_high_6
NF12317_high_6
[»] chr6 (23 HSPs)
chr6 (181-291)||(405863-405973)
chr6 (182-285)||(416951-417054)
chr6 (20-88)||(406506-406574)
chr6 (220-291)||(398183-398254)
chr6 (86-129)||(3922844-3922887)
chr6 (86-129)||(6755222-6755265)
chr6 (114-170)||(406458-406515)
chr6 (89-129)||(3218446-3218486)
chr6 (89-129)||(3922539-3922579)
chr6 (89-129)||(4243228-4243268)
chr6 (89-129)||(14763613-14763653)
chr6 (89-129)||(23068696-23068736)
chr6 (89-129)||(33595625-33595665)
chr6 (90-129)||(3218152-3218191)
chr6 (90-129)||(33595320-33595359)
chr6 (89-129)||(23069001-23069041)
chr6 (89-129)||(4242923-4242963)
chr6 (90-129)||(14763319-14763358)
chr6 (87-129)||(10026138-10026180)
chr6 (91-129)||(14655078-14655116)
chr6 (87-129)||(28852186-28852228)
chr6 (89-129)||(10810281-10810321)
chr6 (89-129)||(24896447-24896487)
[»] chr4 (51 HSPs)
chr4 (84-129)||(23163276-23163321)
chr4 (81-129)||(9525797-9525845)
chr4 (86-129)||(26202519-26202562)
chr4 (86-129)||(28458827-28458870)
chr4 (86-129)||(33692259-33692302)
chr4 (86-129)||(37872764-37872807)
chr4 (86-129)||(41689386-41689429)
chr4 (88-129)||(55742620-55742661)
chr4 (89-129)||(13294908-13294948)
chr4 (89-129)||(20930975-20931015)
chr4 (89-129)||(21053601-21053641)
chr4 (89-129)||(23163585-23163625)
chr4 (89-129)||(33369509-33369549)
chr4 (89-129)||(49621439-49621479)
chr4 (89-129)||(49621743-49621783)
chr4 (86-129)||(2685982-2686025)
chr4 (86-129)||(52690403-52690446)
chr4 (91-129)||(50161422-50161460)
chr4 (88-129)||(21707908-21707949)
chr4 (88-129)||(30055207-30055248)
chr4 (84-129)||(42856799-42856844)
chr4 (88-129)||(42857107-42857148)
chr4 (92-129)||(50161118-50161155)
chr4 (89-129)||(9526114-9526154)
chr4 (89-129)||(25297680-25297720)
chr4 (89-129)||(30055509-30055549)
chr4 (89-129)||(33692567-33692607)
chr4 (89-129)||(46143576-46143616)
chr4 (89-129)||(48419522-48419562)
chr4 (89-129)||(52690096-52690136)
chr4 (90-129)||(30799629-30799668)
chr4 (82-129)||(37068678-37068725)
chr4 (90-129)||(46143273-46143312)
chr4 (86-129)||(55140195-55140238)
chr4 (91-129)||(3546490-3546528)
chr4 (91-129)||(28458523-28458561)
chr4 (92-129)||(30799295-30799332)
chr4 (89-126)||(55742916-55742953)
chr4 (89-129)||(3546796-3546836)
chr4 (89-129)||(32488584-32488624)
chr4 (86-129)||(21360454-21360497)
chr4 (86-129)||(45655966-45656009)
chr4 (99-129)||(5260204-5260234)
chr4 (88-129)||(5260498-5260539)
chr4 (89-126)||(20931286-20931323)
chr4 (92-125)||(25297990-25298023)
chr4 (92-129)||(33369817-33369854)
chr4 (92-125)||(41689701-41689734)
chr4 (89-125)||(13294602-13294638)
chr4 (89-129)||(20983914-20983954)
chr4 (89-125)||(37873072-37873108)
[»] chr8 (34 HSPs)
chr8 (85-129)||(30904665-30904709)
chr8 (217-275)||(22513682-22513740)
chr8 (89-129)||(2968175-2968215)
chr8 (89-129)||(14577171-14577211)
chr8 (89-129)||(17876075-17876115)
chr8 (89-129)||(27912403-27912443)
chr8 (89-129)||(27958822-27958862)
chr8 (89-129)||(35482702-35482742)
chr8 (89-129)||(35483007-35483047)
chr8 (86-129)||(17875765-17875808)
chr8 (88-129)||(21661001-21661042)
chr8 (88-129)||(30928618-30928659)
chr8 (89-129)||(10682061-10682101)
chr8 (89-129)||(20178371-20178411)
chr8 (89-129)||(20223099-20223139)
chr8 (89-129)||(30904361-30904401)
chr8 (86-129)||(30253900-30253943)
chr8 (93-127)||(10682368-10682402)
chr8 (91-129)||(17844186-17844224)
chr8 (91-129)||(30928315-30928353)
chr8 (88-129)||(13327261-13327302)
chr8 (88-129)||(20223412-20223453)
chr8 (88-129)||(28828490-28828531)
chr8 (88-129)||(44379521-44379562)
chr8 (89-129)||(2967870-2967910)
chr8 (89-129)||(3691582-3691622)
chr8 (89-129)||(10925376-10925416)
chr8 (89-129)||(23792885-23792925)
chr8 (89-129)||(27912095-27912135)
chr8 (89-129)||(27958514-27958554)
chr8 (90-126)||(42123703-42123739)
chr8 (92-129)||(34213388-34213425)
chr8 (89-129)||(3691891-3691931)
chr8 (89-129)||(30463914-30463954)
[»] chr5 (31 HSPs)
chr5 (86-129)||(2094878-2094921)
chr5 (86-129)||(20769709-20769752)
chr5 (86-129)||(30370508-30370551)
chr5 (86-129)||(40834241-40834284)
chr5 (87-129)||(18485657-18485699)
chr5 (87-129)||(32936511-32936553)
chr5 (88-129)||(35362983-35363024)
chr5 (87-127)||(30370818-30370858)
chr5 (89-129)||(35363295-35363335)
chr5 (89-129)||(37093749-37093789)
chr5 (89-129)||(40833936-40833976)
chr5 (88-129)||(19558178-19558219)
chr5 (84-129)||(20339151-20339196)
chr5 (89-129)||(2094575-2094615)
chr5 (89-129)||(7145533-7145573)
chr5 (89-129)||(15179095-15179135)
chr5 (85-129)||(27843019-27843063)
chr5 (89-129)||(32458092-32458132)
chr5 (89-129)||(32936206-32936246)
chr5 (89-129)||(32994460-32994500)
chr5 (89-129)||(35362223-35362263)
chr5 (91-129)||(20770018-20770056)
chr5 (89-129)||(7145844-7145884)
chr5 (89-129)||(13600444-13600484)
chr5 (89-129)||(13600751-13600791)
chr5 (89-129)||(18485965-18486005)
chr5 (87-129)||(25363014-25363056)
chr5 (92-129)||(3539600-3539637)
chr5 (88-129)||(22621321-22621362)
chr5 (85-129)||(16737077-16737121)
chr5 (85-129)||(19984536-19984580)
[»] chr3 (34 HSPs)
chr3 (86-129)||(49621284-49621327)
chr3 (87-129)||(37513396-37513438)
chr3 (84-129)||(49711396-49711441)
chr3 (89-129)||(8851804-8851844)
chr3 (89-129)||(22316720-22316760)
chr3 (89-129)||(22975345-22975385)
chr3 (86-129)||(22317025-22317068)
chr3 (90-129)||(48434108-48434147)
chr3 (91-129)||(11121588-11121626)
chr3 (91-129)||(22975650-22975688)
chr3 (87-129)||(33491710-33491752)
chr3 (87-129)||(36229761-36229803)
chr3 (89-126)||(28830061-28830098)
chr3 (89-129)||(9296383-9296423)
chr3 (89-129)||(23043495-23043535)
chr3 (89-129)||(25847750-25847790)
chr3 (89-129)||(37513091-37513131)
chr3 (90-129)||(49711704-49711743)
chr3 (86-125)||(55009408-55009447)
chr3 (87-129)||(28829751-28829793)
chr3 (92-129)||(3612598-3612635)
chr3 (92-129)||(36230069-36230106)
chr3 (92-129)||(48433801-48433838)
chr3 (89-129)||(8852111-8852151)
chr3 (89-129)||(25847445-25847485)
chr3 (89-129)||(33491602-33491642)
chr3 (89-129)||(41944150-41944190)
chr3 (89-129)||(44506349-44506389)
chr3 (86-129)||(39778553-39778596)
chr3 (89-127)||(11121283-11121321)
chr3 (87-129)||(11220990-11221032)
chr3 (92-129)||(44506049-44506086)
chr3 (89-129)||(2862701-2862741)
chr3 (89-129)||(17574373-17574413)
[»] chr2 (30 HSPs)
chr2 (86-129)||(10044742-10044785)
chr2 (86-129)||(10108810-10108853)
chr2 (89-129)||(601638-601678)
chr2 (89-129)||(2318795-2318835)
chr2 (89-129)||(9320108-9320148)
chr2 (89-129)||(17846008-17846048)
chr2 (89-129)||(18916625-18916665)
chr2 (85-129)||(20364276-20364320)
chr2 (89-129)||(27360119-27360159)
chr2 (89-129)||(27360427-27360467)
chr2 (83-129)||(20363964-20364010)
chr2 (92-129)||(44536490-44536527)
chr2 (89-129)||(4261461-4261501)
chr2 (89-129)||(17846313-17846353)
chr2 (89-129)||(18916930-18916970)
chr2 (86-129)||(18178394-18178437)
chr2 (91-129)||(9319804-9319842)
chr2 (87-129)||(30337422-30337464)
chr2 (88-129)||(2318492-2318533)
chr2 (92-129)||(4261156-4261193)
chr2 (92-129)||(5547356-5547393)
chr2 (89-129)||(981781-981821)
chr2 (90-126)||(5547103-5547139)
chr2 (86-119)||(10045062-10045095)
chr2 (88-129)||(10714007-10714048)
chr2 (89-126)||(30337737-30337774)
chr2 (89-129)||(8322488-8322528)
chr2 (90-126)||(10109124-10109160)
chr2 (89-129)||(40710316-40710356)
chr2 (89-129)||(44536179-44536219)
[»] chr1 (29 HSPs)
chr1 (86-129)||(40902324-40902367)
chr1 (87-129)||(12139330-12139372)
chr1 (89-129)||(2026721-2026761)
chr1 (89-129)||(7113865-7113905)
chr1 (86-125)||(2027029-2027068)
chr1 (82-129)||(12115257-12115304)
chr1 (92-129)||(25780194-25780231)
chr1 (89-129)||(1549327-1549367)
chr1 (89-125)||(17611425-17611461)
chr1 (89-129)||(17611730-17611770)
chr1 (89-129)||(30562784-30562824)
chr1 (89-129)||(30563089-30563129)
chr1 (87-126)||(7114171-7114210)
chr1 (86-129)||(19897173-19897216)
chr1 (91-126)||(25779887-25779922)
chr1 (91-129)||(30002514-30002552)
chr1 (92-129)||(17985290-17985327)
chr1 (92-125)||(30002214-30002247)
chr1 (89-129)||(12139024-12139064)
chr1 (89-129)||(17985593-17985633)
chr1 (89-129)||(40290087-40290127)
chr1 (86-125)||(34480462-34480501)
chr1 (91-129)||(12114954-12114992)
chr1 (99-129)||(40902633-40902663)
chr1 (89-126)||(4969673-4969710)
chr1 (92-129)||(26874501-26874538)
chr1 (89-129)||(5586487-5586527)
chr1 (89-129)||(6489146-6489186)
chr1 (89-129)||(35521481-35521521)
[»] scaffold0029 (2 HSPs)
scaffold0029 (89-129)||(136916-136956)
scaffold0029 (89-129)||(137219-137259)
[»] scaffold0002 (2 HSPs)
scaffold0002 (89-129)||(330197-330237)
scaffold0002 (89-129)||(330500-330540)
[»] chr7 (30 HSPs)
chr7 (89-129)||(7417817-7417857)
chr7 (89-129)||(19305740-19305780)
chr7 (89-129)||(28408546-28408586)
chr7 (89-129)||(49114168-49114208)
chr7 (86-129)||(32523508-32523551)
chr7 (87-129)||(1511188-1511230)
chr7 (92-129)||(2933289-2933326)
chr7 (88-129)||(7417510-7417551)
chr7 (92-129)||(32178160-32178197)
chr7 (89-125)||(8437305-8437341)
chr7 (89-129)||(8437611-8437651)
chr7 (89-129)||(10878625-10878665)
chr7 (89-129)||(32177855-32177895)
chr7 (85-129)||(37453372-37453416)
chr7 (89-129)||(44307611-44307651)
chr7 (89-129)||(49113862-49113902)
chr7 (91-129)||(28408244-28408282)
chr7 (89-126)||(31894563-31894600)
chr7 (92-129)||(32832539-32832576)
chr7 (88-129)||(44307924-44307965)
chr7 (89-129)||(1511492-1511532)
chr7 (89-129)||(31894258-31894298)
chr7 (91-129)||(8869584-8869622)
chr7 (87-129)||(32832232-32832274)
chr7 (89-126)||(19306052-19306089)
chr7 (88-129)||(21733067-21733108)
chr7 (100-129)||(32523212-32523241)
chr7 (86-123)||(43161669-43161706)
chr7 (89-129)||(2933574-2933614)
chr7 (89-129)||(7172931-7172971)
[»] scaffold0347 (2 HSPs)
scaffold0347 (89-129)||(11940-11980)
scaffold0347 (89-129)||(12239-12279)
[»] scaffold0311 (1 HSPs)
scaffold0311 (89-126)||(12905-12942)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 405973 - 405863
Alignment:
Q  181 taagtggttacctccatagtttttgtatgacctctcccttggcaatgtgttgatccagcaaggcaggcacatcattaggagtaacatagccatacatgta 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  405973 taagtggttacctccatagtttttgtatgacctctcccttggcaatatgttgatccagcaaggcaggcacatcattaggagtaacatagccatacatgta 405874  T
Q  281 attaagtatta 291  Q
    ||||| |||||    
T  405873 attaaatatta 405863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 417054 - 416951
Alignment:
Q  182 aagtggttacctccatagtttttgtatgacctctcccttggcaatgtgttgatccagcaaggcaggcacatcattaggagtaacatagccatacatgtaa 281  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  417054 aagtggtcacctccatagtttttgtatgacctctcccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacctgtaa 416955  T
Q  282 ttaa 285  Q
    ||||    
T  416954 ttaa 416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 406574 - 406506
Alignment:
Q  20 cacatagaaggtacataacctttcaatgaagggatgagtagtaataaatgataaatatcaactttattt 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  406574 cacatagaaggtacataacctttcaatgaagggatgagtagtaataaatgataaatatcaactttattt 406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 398183 - 398254
Alignment:
Q  220 tggcaatgtgttgatccagcaaggcaggcacatcattaggagtaacatagccatacatgtaattaagtatta 291  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  398183 tggcaatgtgttgatccagcaaggcagacacatcattaggagtaacataaccatacatgtaattaaatatta 398254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 3922887 - 3922844
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3922887 tttggcaaaattacacaattagtcccttaactttattttaggta 3922844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 6755265 - 6755222
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6755265 tttggcaaaattacacaattagtcccttaactttattttaggta 6755222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 406515 - 406458
Alignment:
Q  114 aactttattt-taggtacaaagaaatggactcgtgtgaacgaatgagttttgtactag 170  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  406515 aactttatttataggtacaaagaaacggactcgtgtgaacgaatgagttttttactag 406458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 3218486 - 3218446
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3218486 ggcaaaattacacaattagtcccttaactttattttaggta 3218446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 3922539 - 3922579
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3922539 ggcaaaattacacaattagtcccttaactttattttaggta 3922579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 4243268 - 4243228
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4243268 ggcaaaattacacaattagtcccttaactttattttaggta 4243228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 14763653 - 14763613
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14763653 ggcaaaattacacaattagtcccttaactttattttaggta 14763613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 23068696 - 23068736
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23068696 ggcaaaattacacaattagtcccttaactttattttaggta 23068736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 33595665 - 33595625
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33595665 ggcaaaattacacaattagtcccttaactttattttaggta 33595625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 3218152 - 3218191
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3218152 gcaaaattacacaattagtcccttaactttattttaggta 3218191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 33595320 - 33595359
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33595320 gcaaaattacacaattagtcccttaactttattttaggta 33595359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 23069041 - 23069001
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  23069041 ggcaaaattacacaattagtctcttaactttattttaggta 23069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 4242923 - 4242963
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  4242923 ggcaaaattacacaattagtcctttaattttattttaggta 4242963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 14763319 - 14763358
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  14763319 gcaaaattatacaatcagtcccttaactttattttaggta 14763358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 10026138 - 10026180
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||| || |||||||||||||| ||||||||||    
T  10026138 ttggcaaaattacataaatagtcccttaacttaattttaggta 10026180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 14655078 - 14655116
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  14655078 caaaattacacttttagtcccttaactttattttaggta 14655116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 28852186 - 28852228
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  28852186 ttggcaaaattacacttttagtcccttaacttaattttaggta 28852228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 10810321 - 10810281
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| |||| || ||||||||||    
T  10810321 ggcaaaattacacaattagtcctttaatttaattttaggta 10810281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 24896487 - 24896447
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  24896487 ggcaaaattacacttttggtcccttaactttattttaggta 24896447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 23163276 - 23163321
Alignment:
Q  84 tatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23163276 tatttggcaaaattacacaattagtcccttaactttattttaggta 23163321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 9525797 - 9525845
Alignment:
Q  81 ctttatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9525797 ctttttttggcaaaattacacaattagtcccttaactttattttaggta 9525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 26202519 - 26202562
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26202519 tttggcaaaattacacaattagtcccttaactttattttaggta 26202562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 28458870 - 28458827
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28458870 tttggcaaaattacacaattagtcccttaactttattttaggta 28458827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 33692259 - 33692302
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33692259 tttggcaaaattacacaattagtcccttaactttattttaggta 33692302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 37872764 - 37872807
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37872764 tttggcaaaattacacaattagtcccttaactttattttaggta 37872807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 41689386 - 41689429
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41689386 tttggcaaaattacacaattagtcccttaactttattttaggta 41689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 55742620 - 55742661
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  55742620 tggcaaaattacacaattagtcccttaactttattttaggta 55742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 13294948 - 13294908
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13294948 ggcaaaattacacaattagtcccttaactttattttaggta 13294908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 20930975 - 20931015
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20930975 ggcaaaattacacaattagtcccttaactttattttaggta 20931015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 21053641 - 21053601
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21053641 ggcaaaattacacaattagtcccttaactttattttaggta 21053601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 23163625 - 23163585
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23163625 ggcaaaattacacaattagtcccttaactttattttaggta 23163585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 33369509 - 33369549
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33369509 ggcaaaattacacaattagtcccttaactttattttaggta 33369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 49621439 - 49621479
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49621439 ggcaaaattacacaattagtcccttaactttattttaggta 49621479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 49621783 - 49621743
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49621783 ggcaaaattacacaattagtcccttaactttattttaggta 49621743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 2685982 - 2686025
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  2685982 tttggcaaaattacacaattagtcccttaacttaattttaggta 2686025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 52690446 - 52690403
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  52690446 tttggcaaaattacacaattagtctcttaactttattttaggta 52690403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 50161460 - 50161422
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50161460 caaaattacacaattagtcccttaactttattttaggta 50161422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 21707949 - 21707908
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21707949 tggcaaaattacacaattagtctcttaactttattttaggta 21707908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 30055207 - 30055248
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  30055207 tggcaaaattacacaattagtcccttaacttaattttaggta 30055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 42856799 - 42856844
Alignment:
Q  84 tatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||    
T  42856799 tattaggcaaaattacacaattagtcccttaattttattttaggta 42856844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 42857148 - 42857107
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  42857148 tggcaaaattacacaattagtcccttaattttattttaggta 42857107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 50161118 - 50161155
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50161118 aaaattacacaattagtcccttaactttattttaggta 50161155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 9526154 - 9526114
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  9526154 ggcaaaataacacaattagtcccttaactttattttaggta 9526114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 25297680 - 25297720
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  25297680 ggcaaaattacacaattagtcccttaacttaattttaggta 25297720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 30055549 - 30055509
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  30055549 ggcaaaattacacaattagtcccttaacttaattttaggta 30055509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 33692607 - 33692567
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  33692607 ggcaaaattacacaattagtcccttaattttattttaggta 33692567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 46143616 - 46143576
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  46143616 ggcaaaattacacaattagtgccttaactttattttaggta 46143576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 48419562 - 48419522
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  48419562 ggcaaaataacacaattagtcccttaactttattttaggta 48419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 52690096 - 52690136
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  52690096 ggcaaaattacacaattagtcgcttaactttattttaggta 52690136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 30799668 - 30799629
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30799668 gcaaaattacacaattagtcccttaacttaattttaggta 30799629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 37068678 - 37068725
Alignment:
Q  82 tttatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  37068678 tttatttggcaaaattacacttttagtcccttaacttaattttaggta 37068725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 46143273 - 46143312
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  46143273 gcaaaattacacaattagtcccttaattttattttaggta 46143312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 55140195 - 55140238
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  55140195 tttggcaaaattacacgattaatcccttaactttattttaggta 55140238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 3546490 - 3546528
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  3546490 caaaattacataattagtcccttaactttattttaggta 3546528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 28458523 - 28458561
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  28458523 caaaattacacaattagtcccttaacattattttaggta 28458561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 30799295 - 30799332
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30799295 aaaattacacaattagtcccttaacttaattttaggta 30799332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 55742953 - 55742916
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||||||||||||||| |||||||||||||||    
T  55742953 ggcaaaattacacaattagtcctttaactttattttag 55742916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 3546836 - 3546796
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  3546836 ggcaaaattacacaattagtttcttaactttattttaggta 3546796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 32488584 - 32488624
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  32488584 ggcaaaattacacttttagtcccttaactttattttaggta 32488624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 21360454 - 21360497
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| || |||||||||||||| ||||||||||    
T  21360454 tttggcaaaattacataaatagtcccttaacttaattttaggta 21360497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 45656009 - 45655966
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||    
T  45656009 tttggcaaaattacacttttagtcccttaacttaattttaggta 45655966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 5260204 - 5260234
Alignment:
Q  99 cacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||    
T  5260204 cacaattagtcccttaactttattttaggta 5260234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 5260539 - 5260498
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||| ||||||||  ||||||||||||||||||    
T  5260539 tggcaaaattacataattagtcttttaactttattttaggta 5260498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 20931323 - 20931286
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  20931323 ggcaaaattacacgattagttccttaactttattttag 20931286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 25298023 - 25297990
Alignment:
Q  92 aaaattacacaattagtcccttaactttatttta 125  Q
    ||||||||||||||||||||||||||| ||||||    
T  25298023 aaaattacacaattagtcccttaacttaatttta 25297990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 33369854 - 33369817
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  33369854 aaaattacacaattagtctcttaactatattttaggta 33369817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 41689734 - 41689701
Alignment:
Q  92 aaaattacacaattagtcccttaactttatttta 125  Q
    |||||||||||||||| |||||||||||||||||    
T  41689734 aaaattacacaattagccccttaactttatttta 41689701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 13294602 - 13294638
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttatttta 125  Q
    ||||||||  |||||||||||||||||||||||||||    
T  13294602 ggcaaaatagcacaattagtcccttaactttatttta 13294638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 20983914 - 20983954
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  20983914 ggcaaaattacacttttggtcccttaactttattttaggta 20983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 37873108 - 37873072
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttatttta 125  Q
    |||||||||| | ||||||||||||||||||||||||    
T  37873108 ggcaaaattatataattagtcccttaactttatttta 37873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 30904709 - 30904665
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30904709 atttggcaaaattacacaattagtcccttaactttattttaggta 30904665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 22513682 - 22513740
Alignment:
Q  217 ccttggcaatgtgttgatccagcaaggcaggcacatcattaggagtaacatagccatac 275  Q
    |||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||    
T  22513682 ccttggcaatgtgttggtctagcaaggcaagcacatcattacgagtaacatagccatac 22513740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 2968215 - 2968175
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2968215 ggcaaaattacacaattagtcccttaactttattttaggta 2968175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 14577211 - 14577171
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14577211 ggcaaaattacacaattagtcccttaactttattttaggta 14577171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 17876115 - 17876075
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17876115 ggcaaaattacacaattagtcccttaactttattttaggta 17876075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 27912443 - 27912403
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27912443 ggcaaaattacacaattagtcccttaactttattttaggta 27912403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 27958862 - 27958822
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27958862 ggcaaaattacacaattagtcccttaactttattttaggta 27958822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 35482702 - 35482742
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35482702 ggcaaaattacacaattagtcccttaactttattttaggta 35482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 35483047 - 35483007
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35483047 ggcaaaattacacaattagtcccttaactttattttaggta 35483007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 17875765 - 17875808
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  17875765 tttgggaaaattacacaattagtcccttaactttattttaggta 17875808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 21661042 - 21661001
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  21661042 tggcaaaattacacatttagtcccttaactttattttaggta 21661001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 30928659 - 30928618
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  30928659 tggcaaaattacacaattagtcccttaacttaattttaggta 30928618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 10682061 - 10682101
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  10682061 ggcaaaattacacaattaatcccttaactttattttaggta 10682101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 20178371 - 20178411
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20178371 ggcaaaattacacaattagtcccttaacttaattttaggta 20178411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 20223099 - 20223139
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20223099 ggcaaaattacacaattagtcccttaacttaattttaggta 20223139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 30904361 - 30904401
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  30904361 ggcaaaattacacaattaatcccttaactttattttaggta 30904401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 30253943 - 30253900
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  30253943 tttggcaaaattacacttttagtcccttaactttattttaggta 30253900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 10682402 - 10682368
Alignment:
Q  93 aaattacacaattagtcccttaactttattttagg 127  Q
    |||||||||||||||||||||||||||||||||||    
T  10682402 aaattacacaattagtcccttaactttattttagg 10682368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 17844224 - 17844186
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  17844224 caaaattacacaattagtcccttaacttaattttaggta 17844186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 30928315 - 30928353
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30928315 caaaattacacaattagtcccttaacttaattttaggta 30928353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 13327261 - 13327302
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  13327261 tggcaaaattacacaattagttccttaacttaattttaggta 13327302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 20223453 - 20223412
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  20223453 tggcaaaattacacaattaatcccttaacttaattttaggta 20223412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 28828531 - 28828490
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  28828531 tggcaaaattacacttttagtcccttaactttattttaggta 28828490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 44379521 - 44379562
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  44379521 tggcaaaattacacaattaatcccttaacttaattttaggta 44379562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 2967870 - 2967910
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  2967870 ggcaaaatagcacaattagtcccttaactttattttaggta 2967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 3691582 - 3691622
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  3691582 ggcaaaattacacaattagtcccttaacataattttaggta 3691622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 10925416 - 10925376
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  10925416 ggcaaaattacacttttagtcccttaactttattttaggta 10925376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 23792925 - 23792885
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  23792925 ggcaaaataacacaattagtcccttaacttaattttaggta 23792885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 27912095 - 27912135
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  27912095 ggcaaaatagcacaattagtcccttaactttattttaggta 27912135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 27958514 - 27958554
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  27958514 ggcaaaatagcacaattagtcccttaactttattttaggta 27958554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 42123703 - 42123739
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42123703 gcaaaattacacaattagtcccttaacttaattttag 42123739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 34213388 - 34213425
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  34213388 aaaattacacttttagtcccttaactttattttaggta 34213425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 3691931 - 3691891
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| |||||| |||| ||||||||||    
T  3691931 ggcaaaattacacaattaatcccttcacttaattttaggta 3691891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 30463914 - 30463954
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  30463914 ggcaaaattacatttttagtcccttaactttattttaggta 30463954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 2094921 - 2094878
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2094921 tttggcaaaattacacaattagtcccttaactttattttaggta 2094878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 20769709 - 20769752
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20769709 tttggcaaaattacacaattagtcccttaactttattttaggta 20769752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 30370508 - 30370551
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30370508 tttggcaaaattacacaattagtcccttaactttattttaggta 30370551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 40834284 - 40834241
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40834284 tttggcaaaattacacaattagtcccttaactttattttaggta 40834241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 18485657 - 18485699
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18485657 ttggcaaaattacacaattagtcccttaactttattttaggta 18485699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 32936553 - 32936511
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32936553 ttggcaaaattacacaattagtcccttaactttattttaggta 32936511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 35362983 - 35363024
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35362983 tggcaaaattacacaattagtcccttaactttattttaggta 35363024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 30370858 - 30370818
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttagg 127  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30370858 ttggcaaaattacacaattagtcccttaactttattttagg 30370818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 35363335 - 35363295
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35363335 ggcaaaattacacaattagtcccttaactttattttaggta 35363295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 37093789 - 37093749
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37093789 ggcaaaattacacaattagtcccttaactttattttaggta 37093749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 40833936 - 40833976
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40833936 ggcaaaattacacaattagtcccttaactttattttaggta 40833976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 19558219 - 19558178
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  19558219 tggcaaaattacacaattagtcccttaacttaattttaggta 19558178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 20339151 - 20339196
Alignment:
Q  84 tatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  20339151 tattaggcaaaattacacaattaatcccttaactttattttaggta 20339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 2094575 - 2094615
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  2094575 ggcaaaattacacaattaatcccttaactttattttaggta 2094615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 7145533 - 7145573
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  7145533 ggcaaaataacacaattagtcccttaactttattttaggta 7145573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 15179135 - 15179095
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  15179135 ggcaaaattacacaattagtcccttaacttaattttaggta 15179095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 129
Target Start/End: Original strand, 27843019 - 27843063
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  27843019 atttggcaaaattacataattagtcccttaacttaattttaggta 27843063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 32458132 - 32458092
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  32458132 ggcaaaattacacaattagtcccttaacttaattttaggta 32458092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 32936206 - 32936246
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  32936206 ggcaaaattacacaattagtcacttaactttattttaggta 32936246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 32994500 - 32994460
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  32994500 ggcaaaattacacaattagtcccttaacttaattttaggta 32994460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 35362263 - 35362223
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  35362263 ggcaaaattacacaattagtcccttaacttaattttaggta 35362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 20770056 - 20770018
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  20770056 caaaattacacaattagtcccttaacattattttaggta 20770018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 7145884 - 7145844
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  7145884 ggcaaaattacataattaatcccttaactttattttaggta 7145844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 13600444 - 13600484
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  13600444 ggcaaaattacacaattagtcctttacctttattttaggta 13600484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 13600791 - 13600751
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  13600791 ggcaaaattacacaattagtctcttaactttattgtaggta 13600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 18486005 - 18485965
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  18486005 ggcaaaatagcacaattagtcccttaactttattttaggta 18485965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 25363014 - 25363056
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||  ||||||||||||| ||||||||||    
T  25363014 ttggcaaaattacacaaacagtcccttaacttaattttaggta 25363056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 3539600 - 3539637
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  3539600 aaaattatacaattaatcccttaactttattttaggta 3539637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 22621362 - 22621321
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||  ||||||||||||||| ||||||||||    
T  22621362 tggcaaaattacacttttagtcccttaacttaattttaggta 22621321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 16737121 - 16737077
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||  ||||||||||||||| |||| |||||    
T  16737121 atttggcaaaattacacttttagtcccttaacttaatttcaggta 16737077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 19984580 - 19984536
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||   ||||||||||||||| ||||||||||    
T  19984580 atttggcaaaattacatttttagtcccttaacttaattttaggta 19984536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 49621327 - 49621284
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  49621327 tttggcaaaattacacaattagtcccttaactttattttaggta 49621284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 37513438 - 37513396
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37513438 ttggcaaaattacacaattagtcccttaactttattttaggta 37513396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 49711396 - 49711441
Alignment:
Q  84 tatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  49711396 tattaggcaaaattacacaattagtcccttaactttattttaggta 49711441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 8851804 - 8851844
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8851804 ggcaaaattacacaattagtcccttaactttattttaggta 8851844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 22316720 - 22316760
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22316720 ggcaaaattacacaattagtcccttaactttattttaggta 22316760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 22975345 - 22975385
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22975345 ggcaaaattacacaattagtcccttaactttattttaggta 22975385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 22317068 - 22317025
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  22317068 tttggcaaaattacacgattagtcccttaactttattttaggta 22317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 48434147 - 48434108
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48434147 gcaaaattacacaattagtcccttaactttattttaggta 48434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 11121626 - 11121588
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11121626 caaaattacacaattagtcccttaactttattttaggta 11121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 22975688 - 22975650
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22975688 caaaattacacaattagtcccttaactttattttaggta 22975650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 33491752 - 33491710
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  33491752 ttggcaaaattacacaattagtctcttaactttattttaggta 33491710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 36229761 - 36229803
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  36229761 ttggtaaaattacacaattagtcccttaactttattttaggta 36229803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 28830098 - 28830061
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28830098 ggcaaaattacacaattagtcccttaactttattttag 28830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 9296383 - 9296423
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  9296383 ggcaaaactacacaattagtcccttaactttattttaggta 9296423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 23043535 - 23043495
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  23043535 ggcaaaattacacaattagtcctttaactttattttaggta 23043495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 25847790 - 25847750
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  25847790 ggcaaaattacacaattagtcccttaattttattttaggta 25847750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 37513091 - 37513131
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37513091 ggcaaaataacacaattagtcccttaactttattttaggta 37513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 49711743 - 49711704
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  49711743 gcaaaattacataattagtcccttaactttattttaggta 49711704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 55009447 - 55009408
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttatttta 125  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  55009447 tttgacaaaattacacaattagtcccttaactttatttta 55009408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 28829751 - 28829793
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
T  28829751 ttggcaaaattacacaattagttctttaactttattttaggta 28829793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 3612598 - 3612635
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3612598 aaaattacacaattagtcccttaacttaattttaggta 3612635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 36230106 - 36230069
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36230106 aaaattacacaattaatcccttaactttattttaggta 36230069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 48433801 - 48433838
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| |||||||||||||||||||||||||||||    
T  48433801 aaaattacgcaattagtcccttaactttattttaggta 48433838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 8852151 - 8852111
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  8852151 ggcaaaatagcacaattagtcccttaactttattttaggta 8852111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 25847445 - 25847485
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  25847445 ggcaaaattatacaattagtcccttaattttattttaggta 25847485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 33491602 - 33491642
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  33491602 ggcaaaatgacacaattagttccttaactttattttaggta 33491642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 41944190 - 41944150
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  41944190 ggcaaaattacacttttagtcccttaactttattttaggta 41944150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 44506389 - 44506349
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  44506389 ggcaaaattacacaattaatcccttaacttaattttaggta 44506349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 39778596 - 39778553
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||    
T  39778596 tttggcaaaattacacttttagtcccttaacttaattttaggta 39778553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 11121283 - 11121321
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttagg 127  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  11121283 ggcaaaatagcacaattagtcccttaactttattttagg 11121321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 11220990 - 11221032
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  11220990 ttggcaaaattacacttttagtcccttaacttaattttaggta 11221032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 44506049 - 44506086
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  44506049 aaaattacacaattaatcccttaacttaattttaggta 44506086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 2862701 - 2862741
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  ||||||||||||||| ||||||||||    
T  2862701 ggcaaaattacacttttagtcccttaacttaattttaggta 2862741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 17574373 - 17574413
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||| |||| ||||||| ||||||||||    
T  17574373 ggcaaaattacacaattcgtccattaacttaattttaggta 17574413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 10044742 - 10044785
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10044742 tttggcaaaattacacaattagtcccttaactttattttaggta 10044785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 10108810 - 10108853
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  10108810 tttggcaaaattacacaattagtcccttaactttattttaggta 10108853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 601678 - 601638
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  601678 ggcaaaattacacaattagtcccttaactttattttaggta 601638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 2318835 - 2318795
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2318835 ggcaaaattacacaattagtcccttaactttattttaggta 2318795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 9320148 - 9320108
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9320148 ggcaaaattacacaattagtcccttaactttattttaggta 9320108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 17846008 - 17846048
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17846008 ggcaaaattacacaattagtcccttaactttattttaggta 17846048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 18916625 - 18916665
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18916625 ggcaaaattacacaattagtcccttaactttattttaggta 18916665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 20364320 - 20364276
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  20364320 atttggcaaaattacacaattagtcctttaactttattttaggta 20364276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 27360119 - 27360159
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27360119 ggcaaaattacacaattagtcccttaactttattttaggta 27360159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 27360467 - 27360427
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27360467 ggcaaaattacacaattagtcccttaactttattttaggta 27360427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 20363964 - 20364010
Alignment:
Q  83 ttatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||    
T  20363964 ttatatggcaaaattacacaattagtcccttaattttattttaggta 20364010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 44536527 - 44536490
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44536527 aaaattacacaattagtcccttaactttattttaggta 44536490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 4261501 - 4261461
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4261501 ggcaaaattacacaattagtccgttaactttattttaggta 4261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 17846353 - 17846313
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  17846353 ggcaaaattatacaattagtcccttaactttattttaggta 17846313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 18916970 - 18916930
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18916970 ggcaaaattacataattagtcccttaactttattttaggta 18916930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 18178437 - 18178394
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  18178437 tttggcaaaattacacaattagtcctttaactttatattaggta 18178394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 9319804 - 9319842
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9319804 caaaactacacaattagtcccttaactttattttaggta 9319842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 30337422 - 30337464
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  30337422 ttggcaaaattacacaattagtccattaacttaattttaggta 30337464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 2318492 - 2318533
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  2318492 tggcaaaatagcacaattagtcccttaactttattttaggta 2318533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 4261156 - 4261193
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4261156 aaaattacacaattagtcccttaattttattttaggta 4261193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 5547393 - 5547356
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  5547393 aaaattacacaattagtcccttaacttaattttaggta 5547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 981781 - 981821
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  981781 ggcaaaattacacaatttgtcccttaacttaattttaggta 981821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 5547103 - 5547139
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||||||||||||||||||| |||||||    
T  5547103 gcaaaattacacaattagtcccttaacttaattttag 5547139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 10045095 - 10045062
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaacttt 119  Q
    |||||||||||||| |||||||||||||||||||    
T  10045095 tttggcaaaattacgcaattagtcccttaacttt 10045062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 10714007 - 10714048
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||  || |||||||||||||||||||||||    
T  10714007 tggcaaaattacacttttggtcccttaactttattttaggta 10714048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 30337774 - 30337737
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  30337774 ggcaaaattacagaattagtcccttaacttaattttag 30337737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 8322528 - 8322488
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| |||| |||||||||||| ||||||||||    
T  8322528 ggcaaaattacagaattcgtcccttaacttaattttaggta 8322488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 10109160 - 10109124
Alignment:
Q  90 gcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||| || |||||||||||||||||||||||    
T  10109160 gcaaaattacgcacttagtcccttaactttattttag 10109124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 40710316 - 40710356
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||| |||||||||||| |||| |||||    
T  40710316 ggcaaaattacacaattcgtcccttaacttaatttcaggta 40710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 44536179 - 44536219
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||| ||| |||||||||||| ||||||||||||||||||    
T  44536179 ggcaatattgcacaattagtcctttaactttattttaggta 44536219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 40902324 - 40902367
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40902324 tttggcaaaattacacaattagtcccttaactttattttaggta 40902367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 12139372 - 12139330
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  12139372 ttggcaaaattacacaattagtcccttaactttattttaggta 12139330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 2026721 - 2026761
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2026721 ggcaaaattacacaattagtcccttaactttattttaggta 2026761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 7113865 - 7113905
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7113865 ggcaaaattacacaattagtcccttaactttattttaggta 7113905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 2027068 - 2027029
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttatttta 125  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2027068 tttggcaaaattacacaattagtcccttaactttatttta 2027029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 12115304 - 12115257
Alignment:
Q  82 tttatttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  12115304 tttattaggcaaaattacacaattagtcccttaacttaattttaggta 12115257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 25780231 - 25780194
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25780231 aaaattacacaattagtcccttaactttattttaggta 25780194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 1549327 - 1549367
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  1549327 ggcaaaataacacaattagtcccttaactttattttaggta 1549367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 17611425 - 17611461
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttatttta 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  17611425 ggcaaaattacacaattagtcccttaactttatttta 17611461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 17611770 - 17611730
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  17611770 ggcaaaattacataattagtcccttaactttattttaggta 17611730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 30562784 - 30562824
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  30562784 ggcaaaataacacaattagtcccttaactttattttaggta 30562824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 30563129 - 30563089
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  30563129 ggcaaaattacacgattagtcccttaactttattttaggta 30563089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 7114210 - 7114171
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7114210 ttggcaaaattacacaattagtccattaactttattttag 7114171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 19897173 - 19897216
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  19897173 tttggcaaaattatacaattagtcccttaacttaattttaggta 19897216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 25779887 - 25779922
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||||||||||||||||||||||||||    
T  25779887 caaaattacacaattagtcccttaactttattttag 25779922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 30002552 - 30002514
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30002552 caaaataacacaattagtcccttaactttattttaggta 30002514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 17985290 - 17985327
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||| |||||||||||||||||||    
T  17985290 aaaattacacaattagtctcttaactttattttaggta 17985327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 30002214 - 30002247
Alignment:
Q  92 aaaattacacaattagtcccttaactttatttta 125  Q
    ||||||||||||||||||||||||||||||||||    
T  30002214 aaaattacacaattagtcccttaactttatttta 30002247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 12139024 - 12139064
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  12139024 ggcaaaattacacaattagtctcttaattttattttaggta 12139064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 17985633 - 17985593
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  17985633 ggcaaaatagcacaattagtcccttaactttattttaggta 17985593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 40290127 - 40290087
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  40290127 ggcaaaattacataattagtcccttaacttaattttaggta 40290087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34480501 - 34480462
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttatttta 125  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  34480501 tttggcaaaattacacttttagtcccttaactttatttta 34480462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 12114954 - 12114992
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  12114954 caaaattacataattagtcccttaacttaattttaggta 12114992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 40902663 - 40902633
Alignment:
Q  99 cacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||    
T  40902663 cacaattagtcccttaactttattttaggta 40902633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 4969710 - 4969673
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  4969710 ggcaaaattacacaattagtcacttaacttaattttag 4969673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 26874538 - 26874501
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26874538 aaaattacacttttagtcccttaactttattttaggta 26874501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 5586487 - 5586527
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  5586487 ggcaaaattacacttttggtcccttaactttattttaggta 5586527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 6489186 - 6489146
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  6489186 ggcaaaattacaattttagtcccttaactttattttaggta 6489146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 35521521 - 35521481
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  ||||||||||||||| ||||||||||    
T  35521521 ggcaaaattacacttttagtcccttaacttaattttaggta 35521481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 136916 - 136956
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  136916 ggcaaaattacacaattagtcccttaactttattttaggta 136956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 137259 - 137219
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  137259 ggcaaaattacataattagtccatttactttattttaggta 137219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 330197 - 330237
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  330197 ggcaaaattacacaattagtcccttaactttattttaggta 330237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 330540 - 330500
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  330540 ggcaaaattacataattagtccatttactttattttaggta 330500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 7417857 - 7417817
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7417857 ggcaaaattacacaattagtcccttaactttattttaggta 7417817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 19305740 - 19305780
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19305740 ggcaaaattacacaattagtcccttaactttattttaggta 19305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 28408586 - 28408546
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28408586 ggcaaaattacacaattagtcccttaactttattttaggta 28408546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 49114208 - 49114168
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49114208 ggcaaaattacacaattagtcccttaactttattttaggta 49114168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 32523551 - 32523508
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32523551 tttgccaaaattacacaattagtcccttaactttattttaggta 32523508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 1511188 - 1511230
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  1511188 ttggcaaaattacacaattagtcccttaacttaattttaggta 1511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 2933289 - 2933326
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2933289 aaaattacacaattagtcccttaactttattttaggta 2933326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 7417510 - 7417551
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7417510 tggcaaaattacacaattaatcccttaactttattttaggta 7417551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 32178197 - 32178160
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32178197 aaaattacacaattagtcccttaactttattttaggta 32178160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 8437305 - 8437341
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttatttta 125  Q
    |||||||||||||||||||||||||||||||||||||    
T  8437305 ggcaaaattacacaattagtcccttaactttatttta 8437341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 8437651 - 8437611
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  8437651 ggcaaaattacataattagtcccttaactttattttaggta 8437611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 10878625 - 10878665
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  10878625 ggcaaaattacacaattagtcccttaacttaattttaggta 10878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 32177855 - 32177895
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  32177855 ggcaaaattacacaattagtcctttaactttattttaggta 32177895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 37453416 - 37453372
Alignment:
Q  85 atttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  37453416 atttgacaaaattacacaatcagtcccttaactttattttaggta 37453372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 44307611 - 44307651
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44307611 ggcaaaattacacaattagtcccttaacttaattttaggta 44307651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 49113862 - 49113902
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  49113862 ggcaaaattacacaattagtcctttaactttattttaggta 49113902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 28408244 - 28408282
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  28408244 caaaattacacaattagccccttaactttattttaggta 28408282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 31894600 - 31894563
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31894600 ggcaaaattacacaattagtcccttaacttaattttag 31894563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 32832576 - 32832539
Alignment:
Q  92 aaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32832576 aaaattacacaattagtcccttaattttattttaggta 32832539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 44307965 - 44307924
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  44307965 tggcaaaattacacaattaatcccttaacttaattttaggta 44307924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 1511532 - 1511492
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  1511532 ggcaaaattacacaattagtcccttaacttaaatttaggta 1511492  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 31894258 - 31894298
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  31894258 ggcaaaattacacaaatagtcccttaacttaattttaggta 31894298  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 8869584 - 8869622
Alignment:
Q  91 caaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  8869584 caaaattacacaattcgtcccttaacttaattttaggta 8869622  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 32832232 - 32832274
Alignment:
Q  87 ttggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||| | |||||||||||||||| |||||||||||||    
T  32832232 ttggcaaaataatacaattagtcccttaattttattttaggta 32832274  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 19306089 - 19306052
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  19306089 ggcaaaatagcacaattagtcccttaactttattttag 19306052  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 21733067 - 21733108
Alignment:
Q  88 tggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||| |||||||||||||||| |||| |||||    
T  21733067 tggcaaaattacactattagtcccttaacttaatttcaggta 21733108  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 32523212 - 32523241
Alignment:
Q  100 acaattagtcccttaactttattttaggta 129  Q
    ||||||||||||||||||||||||||||||    
T  32523212 acaattagtcccttaactttattttaggta 32523241  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 43161706 - 43161669
Alignment:
Q  86 tttggcaaaattacacaattagtcccttaactttattt 123  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  43161706 tttggcaaaattacacaatttgtcccttaacttaattt 43161669  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 2933614 - 2933574
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  2933614 ggcaaaatagcacaattagttccttaactttattttaggta 2933574  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 7172931 - 7172971
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||  || |||||||||||||||||||||||    
T  7172931 ggcaaaattacacttttggtcccttaactttattttaggta 7172971  T

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Target: scaffold0347 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 11940 - 11980
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  11940 ggcaaaattacacaattagtcccttaacttaattttaggta 11980  T

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Target: scaffold0347; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 12279 - 12239
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttaggta 129  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  12279 ggcaaaattacacaattagtcccttaacttaattttaggta 12239  T

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Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 12942 - 12905
Alignment:
Q  89 ggcaaaattacacaattagtcccttaactttattttag 126  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12942 ggcaaaattacacaattagtcccttaacttaattttag 12905  T

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