View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12319_high_1 (Length: 533)
Name: NF12319_high_1
Description: NF12319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12319_high_1 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Complemental strand, 4257811 - 4257308
Alignment:
| Q |
11 |
cagagatttgttcatgaacatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatggattcgaca |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257811 |
cagagatttgttcatgaccatcttcatccatcacatgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatggattcgaca |
4257712 |
T |
|
| Q |
111 |
gcttgtcgcttaaccatcatattgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagatttt |
210 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257711 |
gcttgtcgctttaccatcatagtgaacacgggagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagatttt |
4257612 |
T |
|
| Q |
211 |
cccacttcatgtttaacaaacccctctgctatccattgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4257611 |
cccacttcatgtttaacaaacccctctgctatccattgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacac |
4257512 |
T |
|
| Q |
311 |
atgacttcaaataatgtggcaagtcatcataactcatgcctaaaattcttgttatattagctaaatgtggattatggtctaactccgaacttagattttg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4257511 |
atgacttcaaataatgtggcaagtcatcataactcatgcctaaaattcttgttatattagctaaatgtggattacggtctaactccgaacttagattttg |
4257412 |
T |
|
| Q |
411 |
gcatagttttttccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257411 |
gcatagttttttccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatt |
4257312 |
T |
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| Q |
511 |
tcct |
514 |
Q |
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|||| |
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| T |
4257311 |
tcct |
4257308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 22620436 - 22620542
Alignment:
| Q |
151 |
accaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgcc |
250 |
Q |
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||||||||||| |||||||||||||| || ||| | ||| ||||||| ||||||| || ||| ||| | ||| |||||||| || ||||||||||||| |
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| T |
22620436 |
accaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgcc |
22620535 |
T |
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| Q |
251 |
gaatcaa |
257 |
Q |
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||||||| |
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| T |
22620536 |
gaatcaa |
22620542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 3310081 - 3310171
Alignment:
| Q |
422 |
tccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
512 |
Q |
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|||||||||| | |||||| |||| |||||||| |||||||| || ||||||||||| || |||| || ||||||||||||||||||| |
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| T |
3310081 |
tccactcagacatggttttagcttttgttgacaaaagacctccaatggccacaattgccagtggtagtcctccacatttttgaacaatttc |
3310171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 2760274 - 2760223
Alignment:
| Q |
52 |
aaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
103 |
Q |
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| T |
2760274 |
aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatgga |
2760223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 515
Target Start/End: Original strand, 3220915 - 3221012
Alignment:
| Q |
418 |
tttttccactcagaaacagttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttcctc |
515 |
Q |
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|||| ||||||| ||| |||||| ||| ||||| || ||||| || || ||||||||||| || ||||| || |||||||||||||||||||||| |
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| T |
3220915 |
ttttcccactcaaaaatggttttagattttgttgataaaagaccaccaatggccacaattgccagtggtaatcctccacatttttgaacaatttcctc |
3221012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 2837768 - 2837876
Alignment:
| Q |
142 |
gagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
241 |
Q |
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||||| |||| || ||||||||| ||||| |||| ||| |||||||| | |||| |||||||| | ||| | | ||| ||| ||||||||||| |||| |
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| T |
2837768 |
gagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaacccctcagcta |
2837867 |
T |
|
| Q |
242 |
tccattgcc |
250 |
Q |
| |
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||||||||| |
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| T |
2837868 |
tccattgcc |
2837876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 2854978 - 2855086
Alignment:
| Q |
142 |
gagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
241 |
Q |
| |
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||||| |||| || ||||||||| ||||| |||| ||| |||||||| | |||| |||||||| | ||| | | ||| ||| ||||||||||| |||| |
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| T |
2854978 |
gagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctctcatcagatttgacaaacccctcagcta |
2855077 |
T |
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| Q |
242 |
tccattgcc |
250 |
Q |
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||||||||| |
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| T |
2855078 |
tccattgcc |
2855086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 512
Target Start/End: Original strand, 3321694 - 3321770
Alignment:
| Q |
436 |
gttttatctttagttgacaagagacctcctatagccacaattgcaagcggtaacccctcacatttttgaacaatttc |
512 |
Q |
| |
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||||||||||| |||||||| |||||||| || ||||||||||| || |||| | ||||||||| ||||||||| |
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| T |
3321694 |
gttttatcttttgttgacaaaagacctccaatggccacaattgccagtggtagttctccacattttttaacaatttc |
3321770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 5223 - 5281
Alignment:
| Q |
45 |
atgacaaaaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga |
103 |
Q |
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|||||||||| | ||||||||||||||||| ||||||| ||| || || |||||||||| |
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| T |
5223 |
atgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatgga |
5281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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