View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12319_high_3 (Length: 266)
Name: NF12319_high_3
Description: NF12319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12319_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22838967 - 22839227
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
22838967 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaaagttccaaccaaatga |
22839066 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22839067 |
gtagtgtgaggatcagcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaacaacacattactagctttta |
22839166 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22839167 |
tgtctctatggataacaactttctcccattcttcatgaagataaaccaaacctgaagcaac |
22839227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22888213 - 22888473
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22888213 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctcttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
22888312 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
22888313 |
gttgtgtgaggatcagcaccatgatcatgcaaccttgaaagaccaaaatctcccaatctagcattaaatccagaatctaacaacacattactagccttta |
22888412 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
22888413 |
tgtctctatgaataacaactttctcccattcttcatgaagataaaccacacctgaagcaac |
22888473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22813942 - 22814202
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22813942 |
aagaagaaatgcaccaaaagaaaacatatcagaaaatttagtggccttacctgttctaatatgttcaggagcaagataaccaattgttccagccaaatga |
22814041 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
22814042 |
gttgtgtgaggatctgcaccatggtcatacaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaataacacattactagctttta |
22814141 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
22814142 |
tgtctctatggataacaactttctcccattcttcatgaagataaaccacacctgaagcaac |
22814202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22874843 - 22875103
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22874843 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttaccagttctaatatgttccggagcaagataaccaatagttccagccaaatga |
22874942 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22874943 |
gttgtgtgaggatcagcaccatgatcatgcaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaacaacacattactagctttta |
22875042 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||||||||| || |||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22875043 |
tgtctctatgaatcacaactttttcccattcttcatgtagataaaccaaacctgaagcaac |
22875103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22804251 - 22804511
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
22804251 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaaagttccaaccaaatga |
22804350 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22804351 |
gtagtgtgaggatcagcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaacaacacattactagctttta |
22804450 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||| |
|
|
| T |
22804451 |
tgtctctatggataacaactttctcccattcttcgtgaagataaaccacagctgaagcaac |
22804511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22892868 - 22893128
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22892868 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttccggagcaagataaccaatagttccagccaaatga |
22892967 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|| |||||| ||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22892968 |
gtcgtgtgatgatctgcaccatggtcatacaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaacaacacattactagctttta |
22893067 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
22893068 |
tgtctctatgaattacaactttctcccattcttcatgaagataaaccacgcctgaagcaac |
22893128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 22829946 - 22830205
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22829946 |
aagaagaaatgcaccaaaagaaaacacatcagaaaattttgtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
22830045 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
22830046 |
gttgtgtgaggatctgcaccgtgatcatacaaccttgaaagaccaaaatctcccaatcttgaattaaattcagaatctaacaacacattactagccttta |
22830145 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaa |
260 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| || |||||||||| |||||| |||| |
|
|
| T |
22830146 |
tgtctctatgaatcacaactttctcccattcttcgtgtagataaaccacacctgacgcaa |
22830205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 22808535 - 22808795
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
22808535 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgctcaggggcaagataaccaatagttccaaccaaatga |
22808634 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
22808635 |
gttgtgtgaggatctgcaccatggtcatacaaccttgaaagaccaaaatctcccaacctagcattaaattcagaatctaacaacacattactagccttta |
22808734 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||||| ||| || ||||||||||| |||||||| || |||||||||| |||||| ||||| |
|
|
| T |
22808735 |
tgtctcgatgaattacaactttctcccattcttcgtgtagataaaccacacctgacgcaac |
22808795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 22897185 - 22897444
Alignment:
| Q |
2 |
agaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatgag |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| || | ||||||| ||||||||| |
|
|
| T |
22897185 |
agaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctagtatgttcaggtgctagataccctacagttccaaccaaatgag |
22897284 |
T |
|
| Q |
102 |
ttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagcttttat |
201 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| |||| ||||||||||||||| ||| || |||| |||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
22897285 |
ttgtgtgaggatcagcaccatgatcatacaaccttgcaagaccaaaatctcctaatctaccattcaattcaccatctaataacacattgctagcctttat |
22897384 |
T |
|
| Q |
202 |
gtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
||||||||| || ||||| | ||| |||||||| || ||||||| |||||| ||||||| |
|
|
| T |
22897385 |
gtctctatgaatcacaacctgctcccattcttcgtgtagataaaacaaacccaaagcaac |
22897444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 22879552 - 22879669
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22879552 |
aagaagaaatgcaccaaaagaaaacatatcagaaaatttagtcgccttacctgttctaatatgttcatgagcaagataaccaatagttccagccaaatga |
22879651 |
T |
|
| Q |
101 |
gttgtgtgaggatctgca |
118 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
22879652 |
gttttgtgaggatctgca |
22879669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 22879667 - 22879767
Alignment:
| Q |
161 |
gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaa |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
22879667 |
gcattgaattcagaatctaacaacacattactagcttttatgtctctatggataacaactttctcccatttttcatgaagataaaccacacctgaagcaa |
22879766 |
T |
|
| Q |
261 |
c |
261 |
Q |
| |
|
| |
|
|
| T |
22879767 |
c |
22879767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 261
Target Start/End: Original strand, 22912586 - 22912840
Alignment:
| Q |
7 |
aaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatgagttgtg |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | ||||| ||||||||||| ||||||| || || | |||||||| |||||| | | ||| ||||| |
|
|
| T |
22912586 |
aaatgcaccaaaagaatacacatcagaacttgttgtagctttacctgttcttgtatgttctggtgctaaataaccaagtgttccaacaacatgtgttgtt |
22912685 |
T |
|
| Q |
107 |
tgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagcttttatgtctc |
206 |
Q |
| |
|
|||||||| | |||||||||| |||||||| | ||||||||| || ||| || |||| | |||| |||||| || |||||||||||||| ||||||| |
|
|
| T |
22912686 |
tgaggatcagttccatgatcatataatcttgataaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctc |
22912785 |
T |
|
| Q |
207 |
tatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||| |||||||||| || ||||||||||| | ||||| |||||| |||||||| |
|
|
| T |
22912786 |
tatgaataacaacttgttcccattcttcatgtaaataaaacaaaccagaagcaac |
22912840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21151799 - 21151539
Alignment:
| Q |
1 |
aagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttcaggagcaagataaccaatagttccagccaaatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21151799 |
aagaagaaatgcaccaaaagaaaacacatcagaagatttagtagccttacctgttctaatatgttccggagcaagataaccaatagttccagccaaatga |
21151700 |
T |
|
| Q |
101 |
gttgtgtgaggatctgcaccatgatcatgcaatcttgaaagaccaaaatctcccaatttagcattgaattcagaatctaacaacacattactagctttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21151699 |
gttgtgtgaggatctgcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcattaaattcagaatctaacaacacattactagctttta |
21151600 |
T |
|
| Q |
201 |
tgtctctatggataacaactttctcacattcttcatgaagataaaccaaacctgaagcaac |
261 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||| |||||||||| || ||||||||| |
|
|
| T |
21151599 |
tgtctctatgaattacaactttctcccattcttcatgtagataaaccacacttgaagcaac |
21151539 |
T |
|
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