View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12319_high_4 (Length: 242)
Name: NF12319_high_4
Description: NF12319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12319_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 43294271 - 43294434
Alignment:
| Q |
63 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaannnnnnngttgattgatgagagttattcccacaata |
162 |
Q |
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| T |
43294271 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaatttttttgttgattgatgagagttattcccacaata |
43294370 |
T |
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| Q |
163 |
taaacttaacacctatattcttatccttactactcactagtcactataactcaagtataagttg |
226 |
Q |
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| T |
43294371 |
taaacttaacacctatattcttatccttactactcactagtcactataactcaagtataagttg |
43294434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 44026690 - 44026518
Alignment:
| Q |
63 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaannnnnnn---------gttgattgatgagagttatt |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44026690 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaaatcaatttttttttttgttgattgatgagagttatt |
44026591 |
T |
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| Q |
154 |
cccacaatataaacttaacacctatattcttatccttactactcactagtcactataactcaagtataagttg |
226 |
Q |
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| T |
44026590 |
cccacaatataaacttaacacctatattcttatccttactactcactagtcactataactcaagtataagttg |
44026518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 44026716 - 44026688
Alignment:
| Q |
20 |
ttatatccacattcaaattacaaaagtaa |
48 |
Q |
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| T |
44026716 |
ttatatccacattcaaattacaaaagtaa |
44026688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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