View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12319_high_6 (Length: 234)
Name: NF12319_high_6
Description: NF12319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12319_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 44027030 - 44027151
Alignment:
| Q |
1 |
actctgtcagcattcaacgtcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtctt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027030 |
actctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtctt |
44027129 |
T |
|
| Q |
101 |
gtctcgcttgtatgttactcaa |
122 |
Q |
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||||| ||| |||||||||||| |
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| T |
44027130 |
gtctcccttctatgttactcaa |
44027151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 44027189 - 44027293
Alignment:
| Q |
118 |
ctcaaattcgagctaaactaaaagttttacattaaataaaaaagtatggcatcagagttttgaacattcctgtgcgccttctagtctcatcaattggtat |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
44027189 |
ctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagttctgaacattcctatgcaccttctagtcccatcaattggtat |
44027288 |
T |
|
| Q |
218 |
catag |
222 |
Q |
| |
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||||| |
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| T |
44027289 |
catag |
44027293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 43293931 - 43293810
Alignment:
| Q |
1 |
actctgtcagcattcaacgtcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtctt |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293931 |
actctgtcagcattcaacttcacttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtctt |
43293832 |
T |
|
| Q |
101 |
gtctcgcttgtatgttactcaa |
122 |
Q |
| |
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||||| ||| |||||||||||| |
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| T |
43293831 |
gtctcccttctatgttactcaa |
43293810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 43293772 - 43293668
Alignment:
| Q |
118 |
ctcaaattcgagctaaactaaaagttttacattaaataaaaaagtatggcatcagagttttgaacattcctgtgcgccttctagtctcatcaattggtat |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
43293772 |
ctcaaattcgagctaagctaaaagttttacattaaatgaaaaagtatggcatcggagttctgaacattcctatgcaccttctagtcccatcaattggtat |
43293673 |
T |
|
| Q |
218 |
catag |
222 |
Q |
| |
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||||| |
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|
| T |
43293672 |
catag |
43293668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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