View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12319_low_5 (Length: 240)
Name: NF12319_low_5
Description: NF12319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12319_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 6935045 - 6934840
Alignment:
| Q |
19 |
ctagcaaatcccttttttggtctctttaacgttaatcaacttataaaggcttcttacaagtgaagttgttttaaaa-gctttttaatagtgctcatttga |
117 |
Q |
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| T |
6935045 |
ctagcaaatcccttttttggtctctttaacgttaatcaacttataaaggcttcttacaagtgaagttgttttaaaaagctttttaatagtgctcatttga |
6934946 |
T |
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| Q |
118 |
actgaaggaaggaa-gccagggagttgatcttgcacattgaaaagcataatttgtatcagacatgctcaaagctttataccaatggtaagtgctcacagt |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
6934945 |
actgaaggaaggaaagccagggagttgatcttgcacattgaaaggcataatttgtatcagacatgctcaaagctttataccaatggtaagtgctaatagt |
6934846 |
T |
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| Q |
217 |
attctt |
222 |
Q |
| |
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|||||| |
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| T |
6934845 |
attctt |
6934840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 6526258 - 6526299
Alignment:
| Q |
125 |
gaaggaagccagggagttgatcttgcacattgaaaagcataa |
166 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
6526258 |
gaaggatgccagggagttgatcttgcacattcaaaggcataa |
6526299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 6843036 - 6843077
Alignment:
| Q |
125 |
gaaggaagccagggagttgatcttgcacattgaaaagcataa |
166 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
6843036 |
gaaggatgccagggagttgatcttgcacattcaaaggcataa |
6843077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 6935135 - 6935107
Alignment:
| Q |
31 |
ttttttggtctctttaacgttaatcaact |
59 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6935135 |
ttttttggtctctttaacgttaatcaact |
6935107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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