View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12320_high_10 (Length: 256)
Name: NF12320_high_10
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 14352710 - 14352937
Alignment:
| Q |
14 |
agaacacaatagaagggatattggaagtttatgaggcgaagtttcttgtgatcgccaccggcgaaaatagtgaaggttatattcctaatgtgcctggact |
113 |
Q |
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| T |
14352710 |
agaacacaatagaagggatattggaagtttatgaggcgaagtttcttgtgatcgccaccggcgaaaatagtgaaggttatattcctaatgtgcctggact |
14352809 |
T |
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| Q |
114 |
gaataactttgaaggagaggtggtacactccaaaaattacaaatctggttcaaaatatgaaacaaaagaggttttggtagttggatgtggtaactcagga |
213 |
Q |
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| T |
14352810 |
gaataactttgaaggagaggtggtacactccaaaaattacaaatctggttcaaaatataaaacaaaagaggttttggtagttggatgtggtaactcagga |
14352909 |
T |
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| Q |
214 |
atggagattgcttatgacctccataact |
241 |
Q |
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| T |
14352910 |
atggagattgcttatgacctccataact |
14352937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 43886454 - 43886236
Alignment:
| Q |
24 |
agaagggatattggaagtttatgaggcgaagtttcttgtgatcgccaccggcgaaaatagtgaaggttatattcctaatgtgcctggactgaataacttt |
123 |
Q |
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| T |
43886454 |
agaaggaatattggaattttatgaggcaaagtttcttgtgattgccaccggcaaaaaaagtgaaggttatattcctaacgtgcctggaatggatgacttt |
43886355 |
T |
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| Q |
124 |
gaaggagaggtggtacactccaaaaattacaaatctggttcaaaatatgaaacaaaagaggttttggtagttggatgtggtaactcaggaatggagattg |
223 |
Q |
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| T |
43886354 |
gaaggagaggtggtacactcgaaatattacaaatctggttcaaaatatgaatcaaaagaggttttggtagttgggtgtggtaactcataaatggagattg |
43886255 |
T |
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| Q |
224 |
cttatgacctccataactg |
242 |
Q |
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| T |
43886254 |
cttatgatctccataactg |
43886236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 12380160 - 12380363
Alignment:
| Q |
33 |
attggaagtttatgaggcgaagtttcttgtgatcgccaccggcgaaaatagtgaaggttatattcctaatgtgcctggactgaataactttgaaggagag |
132 |
Q |
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| T |
12380160 |
attggaggtttatgtgtcgaattatcttgtgattgccactggtgaaaatagtgaaggttatattcctaatgtgcctggactaggcaacttcgaaggagag |
12380259 |
T |
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| Q |
133 |
gtggtacactccaaaaattacaaatctggttcaaaatatgaaacaaaagaggttttggtagttggatgtggtaactcaggaatggagattgcttatgacc |
232 |
Q |
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| T |
12380260 |
gtgatgcactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgttttggtagttgggtgtggtaactcaggaatggagattgcttatgacc |
12380359 |
T |
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| Q |
233 |
tcca |
236 |
Q |
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|||| |
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| T |
12380360 |
tcca |
12380363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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