View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12320_high_3 (Length: 442)
Name: NF12320_high_3
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 52558975 - 52558556
Alignment:
| Q |
7 |
tcaacgacaggtagatttcccatatcatgacatattttctcaataactgtaataagcatacacaaataaataatattttactgtatgctctacctcaatc |
106 |
Q |
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| T |
52558975 |
tcaacgacaggtagatttcccatatcatgacatattttctcaataactgtaataagcatacacaaataaataatattttactgtatgctctacctcaatc |
52558876 |
T |
|
| Q |
107 |
catgctgtcagtctaggcctgcccactgtaatgtcataatttttcacatccattaaaaacggttgaaatctttccatgaaaggagcatatgttatatcca |
206 |
Q |
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| T |
52558875 |
catgctgtcagtctaggcctgcccactgtaatgtcataatttttcacatccattaaaaacggttgaaatctttccatgaaaggagcatatgctatatcca |
52558776 |
T |
|
| Q |
207 |
cctgaaattaatagaaaactttgacaagttcaatttaattgtgaaaacgcacaagaagagtatactatgcattgccattgctacaaatcaatataagtat |
306 |
Q |
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| T |
52558775 |
cctgaaattaatagaaaactttgacaagttcaatttaattgtgaaaacgcacaagaagagtatactatgcattgccattgctacaaatcaatataagtat |
52558676 |
T |
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| Q |
307 |
actcaccagactgaattggccaaggaagaaaggtccttgatcatatttggagagaacagtctcaaggtaatcaaatgcagtgcctaatgaagcagtgtaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52558675 |
actcaccagactgaattggccaaggaagaaaggtccgtgatcatatttggagagaacagtctcaaggtaatcaaatgcagtgcctaatgaagcagtgtaa |
52558576 |
T |
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| Q |
407 |
ggtgagtcatgctttacatg |
426 |
Q |
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| T |
52558575 |
ggtgagtcatgctttacatg |
52558556 |
T |
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