View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12320_high_4 (Length: 384)
Name: NF12320_high_4
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_high_4 |
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| [»] scaffold0562 (1 HSPs) |
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Alignment Details
Target: scaffold0562 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0562
Description:
Target: scaffold0562; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 7369 - 7013
Alignment:
| Q |
10 |
gcagagagtaaaagggtgcaaacagcaataatgctcagtcacaaaccaaacagagaagtgtacacttctgaacattacatagcaaacaaaaagtaattaa |
109 |
Q |
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| T |
7369 |
gcagagagtaaaagggtgcaaacagcaataatgctgagtcacaaaccaaacagagaagtgtacacttctgaacattacatagcaaacaaaaagtaattaa |
7270 |
T |
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| Q |
110 |
tcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagttacgttagaaaaaacaccataaccttatatnnnnnnnnntaaagaaa |
209 |
Q |
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| T |
7269 |
tcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagttacgttagaaaaaacaccataaccttatat-aaaaaaaataaagaaa |
7171 |
T |
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| Q |
210 |
caccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaaggattttaacacaaccttaaaccaaattcaacaagc-tttatttgtaa |
308 |
Q |
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| T |
7170 |
caccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaaggattttcacacaaccttaaaccaaattcaacaagcttttatttgtaa |
7071 |
T |
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| Q |
309 |
aacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtggaaac |
366 |
Q |
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| T |
7070 |
aacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtggaaac |
7013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 3876550 - 3876194
Alignment:
| Q |
10 |
gcagagagtaaaagggtgcaaacagcaataatgctcagtcacaaaccaaacagagaagtgtacacttctgaacattacatagcaaacaaaaagtaattaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3876550 |
gcagagagtaaaagggtgcaaacagcaataatgctgagtcacaaaccaaacagagaagtgtacacttctgaacattacatagcaaacaaaaagtaattaa |
3876451 |
T |
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| Q |
110 |
tcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagttacgttagaaaaaacaccataaccttatatnnnnnnnnntaaagaaa |
209 |
Q |
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| T |
3876450 |
tcaaacaaattcatccaattataccataaaccaatcaaacattatgaatcagttacgttagaaaaaacaccataaccttatat-aaaaaaaataaagaaa |
3876352 |
T |
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| Q |
210 |
caccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaaggattttaacacaaccttaaaccaaattcaacaagc-tttatttgtaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
3876351 |
caccataatcaagaaaatccaaaattcatattaatttgtgtcaacccttgaaggattttcacacaaccttaaaccaaattcaacaagcttttatttgtaa |
3876252 |
T |
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| Q |
309 |
aacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtggaaac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3876251 |
aacactcaaaatcaaaagagagacataccttgtctggttttcctatgattgtggaaac |
3876194 |
T |
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