View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12320_high_6 (Length: 374)

Name: NF12320_high_6
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12320_high_6
NF12320_high_6
[»] chr2 (7 HSPs)
chr2 (16-365)||(2327185-2327534)
chr2 (42-362)||(2321335-2321655)
chr2 (43-362)||(2294020-2294339)
chr2 (42-362)||(2310351-2310671)
chr2 (50-362)||(2303633-2303945)
chr2 (49-365)||(2351206-2351522)
chr2 (55-365)||(2330900-2331210)
[»] chr8 (2 HSPs)
chr8 (49-343)||(41127234-41127531)
chr8 (153-269)||(26494893-26495009)
[»] chr4 (1 HSPs)
chr4 (239-286)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (154-275)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 2327534 - 2327185
Alignment:
Q  16 caatatgttattgttatctacatacgcataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2327534 caatatgttattgttatctacatacgcataacacacataatctatattctatgagaaatatgaacttgcaatggatttttcatcaccacggtgaattcaa 2327435  T
Q  116 atttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaatt 215  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327434 atttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaatt 2327335  T
Q  216 atatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggc 315  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327334 atatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggc 2327235  T
Q  316 ttaaactccattggatcctcccaaacacgaggatccaaccccatctctgc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327234 ttaaactccattggatcctcccaaacacgaggatccaaccccatctctgc 2327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 42 - 362
Target Start/End: Complemental strand, 2321655 - 2321335
Alignment:
Q  42 cataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca 141  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||  |||||||||  ||||||||||||||| |||||||||    
T  2321655 cataacacacataatctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaattcatctttttccgacaaatcaacatggcca 2321556  T
Q  142 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag 241  Q
    ||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||  |||    
T  2321555 ccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattctccttccag 2321456  T
Q  242 ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 341  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321455 ctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 2321356  T
Q  342 acgaggatccaaccccatctc 362  Q
    |||||||||| || |||||||    
T  2321355 acgaggatcccacgccatctc 2321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 362
Target Start/End: Complemental strand, 2294339 - 2294020
Alignment:
Q  43 ataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccac 142  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||   | |||||| |||||| ||||| || |    
T  2294339 ataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgc 2294240  T
Q  143 cctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagc 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||  ||||    
T  2294239 cctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagc 2294140  T
Q  243 tccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaaca 342  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||    
T  2294139 tccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaacgggtcctcccaaaca 2294040  T
Q  343 cgaggatccaaccccatctc 362  Q
    |||||||||||| |||||||    
T  2294039 cgaggatccaacgccatctc 2294020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 42 - 362
Target Start/End: Complemental strand, 2310671 - 2310351
Alignment:
Q  42 cataacacacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca 141  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||  ||||||||   | |||||| |||||| ||||| ||     
T  2310671 cataacacacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaattcttgtatttccgtcaaatcaacatgcccg 2310572  T
Q  142 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcag 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||  |||    
T  2310571 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccag 2310472  T
Q  242 ctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaac 341  Q
    ||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  2310471 ctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaac 2310372  T
Q  342 acgaggatccaaccccatctc 362  Q
    |||| |||||||| |||||||    
T  2310371 acgacgatccaacgccatctc 2310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 50 - 362
Target Start/End: Complemental strand, 2303945 - 2303633
Alignment:
Q  50 acataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctgg 149  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||   |||||||   ||||||||||||||| |||| ||| ||||||||    
T  2303945 acataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctgg 2303846  T
Q  150 aaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaac 249  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  | | ||||||||||| || |||||| |||||    
T  2303845 aagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaac 2303746  T
Q  250 ggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggat 349  Q
    ||||||||||| ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303745 ggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggat 2303646  T
Q  350 ccaaccccatctc 362  Q
    || ||||||||||    
T  2303645 cccaccccatctc 2303633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 49 - 365
Target Start/End: Complemental strand, 2351522 - 2351206
Alignment:
Q  49 cacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctg 148  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||    
T  2351522 cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctg 2351423  T
Q  149 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||| ||||| ||| || | |||||    
T  2351422 gaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaa 2351323  T
Q  249 cggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgagga 348  Q
     ||||||||||| |||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2351322 tggcatcatctttatctctttactccccgtaatgtcaaatgtttcatccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgagga 2351223  T
Q  349 tccaaccccatctctgc 365  Q
    ||| |||||||||||||    
T  2351222 tcccaccccatctctgc 2351206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 55 - 365
Target Start/End: Complemental strand, 2331210 - 2330900
Alignment:
Q  55 atctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaacct 154  Q
    ||||| |||||  ||||||||||| | ||||||||||||| ||| ||||  ||||||||   ||| || |||||||| ||  | |||||||| |||||||    
T  2331210 atctagatccttggagaaatatgagcctgcaatggatttttcatgaccatagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaacct 2331111  T
Q  155 tccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcat 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||  |||||||||| |||||    
T  2331110 tccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcat 2331011  T
Q  255 catcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaac 354  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2331010 catctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaac 2330911  T
Q  355 cccatctctgc 365  Q
    |||||||||||    
T  2330910 cccatctctgc 2330900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 49 - 343
Target Start/End: Complemental strand, 41127531 - 41127234
Alignment:
Q  49 cacataatctatatcctatgagaaatatgaacttgcaatggattttgcatcaccacggtgaattcaaatttttccgacaaatcgacatggcca---ccct 145  Q
    |||||||| || |||||| |||||||||||||||||| |||||||| ||| |||||||||||||||  ||||||||||||||| ||||  |||   ||||    
T  41127531 cacataatttagatcctaggagaaatatgaacttgcagtggatttttcataaccacggtgaattcagttttttccgacaaatcaacataaccagctccct 41127432  T
Q  146 ctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctcc 245  Q
    || ||| ||||||||  |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||  || ||||    
T  41127431 ctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaactcc 41127332  T
Q  246 aaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctcccaaacac 343  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  41127331 aaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaacac 41127234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  153 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 252  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  253 atcatcttgatctcttt 269  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  239 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 286  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  154 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 253  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  254 tcatcttgatctctttactccc 275  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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