View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12320_low_11 (Length: 249)
Name: NF12320_low_11
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 36 - 234
Target Start/End: Original strand, 38701232 - 38701421
Alignment:
| Q |
36 |
ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagccaagactacaaccaaactacttttcatacaaag |
135 |
Q |
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| T |
38701232 |
ctataaataaacctctaaatatttaccctttacaaactggatggatctaagagtgcaattcttaagctaagactacaaccaaactacttttcatacaaag |
38701331 |
T |
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| Q |
136 |
tcctaaactgtcaaacggggccctacaaaacatgatcctcaatggttttgttttgtgaagggggtgttagattcgctgcagtacattcaaacttctctg |
234 |
Q |
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| T |
38701332 |
tcctaaac---------gggccctacaaaacatgatcctcaatggttttgttttgtgaaggggatgttagattcgctgcagtacattcaaacttctctg |
38701421 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 10239242 - 10239298
Alignment:
| Q |
32 |
aagtctataaataaacctctaaatatttaccctttacaaactggatggatctaagag |
88 |
Q |
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|||||| |||||||| |||| |||||||||||| | |||| ||||||||||||||| |
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| T |
10239242 |
aagtctctaaataaagctctcaatatttaccctgtgcaaatcggatggatctaagag |
10239298 |
T |
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