View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12320_low_2 (Length: 446)
Name: NF12320_low_2
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 15090695 - 15091117
Alignment:
| Q |
14 |
acctgtgtccacatc---atcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattga |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
15090695 |
acctgtgtccacatcttcatcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacacgcaaatttttatccggacattga |
15090794 |
T |
|
| Q |
111 |
tgacgtggatgatacggacctccacatttaaaacatagtccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgcc |
210 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
15090795 |
tgacgaggatgatacgggcctccacatttaaaacagagtcctttttaacgacggtcagcaatctcctgtgaagacagactcctcacattcttgtcacgcc |
15090894 |
T |
|
| Q |
211 |
aatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacg |
310 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
15090895 |
aatttccagtgttggcagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccacctgtggattttcctccactgtttcctccaggaaaacg |
15090994 |
T |
|
| Q |
311 |
atcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtgaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
15090995 |
atcacgattgtctttgttattacgaaccataacccaatcgccatttctaccttcattctgtgtgacaaccttgtaaccaaaaacgggtcgagatagtgaa |
15091094 |
T |
|
| Q |
411 |
ccatgtgatcttcgtgatgtcca |
433 |
Q |
| |
|
|||||||| ||||| |||||||| |
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|
| T |
15091095 |
ccatgtgaccttcgcgatgtcca |
15091117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 43010985 - 43010593
Alignment:
| Q |
14 |
acctgtgtccacatc---atcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattga |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43010985 |
acctgtgtccacatcttcatcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattga |
43010886 |
T |
|
| Q |
111 |
tgacgtggatgatacggacctccacatttaaaacatagtccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
43010885 |
tgacgtggatgatacggacctccacatttaaaacagagtcctttttgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgcc |
43010786 |
T |
|
| Q |
211 |
aatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacg |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||| |
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|
| T |
43010785 |
aatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtg---cacgattg---tttcctccactgtttcctccaggaaaacg |
43010692 |
T |
|
| Q |
311 |
atcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
409 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43010691 |
atcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
43010593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 43013282 - 43012890
Alignment:
| Q |
14 |
acctgtgtccacatc---atcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattga |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43013282 |
acctgtgtccacatcttcatcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattga |
43013183 |
T |
|
| Q |
111 |
tgacgtggatgatacggacctccacatttaaaacatagtccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43013182 |
tgacgtggatgatacggacctccacatttaaaacagagtcctttttgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgcc |
43013083 |
T |
|
| Q |
211 |
aatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacg |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
43013082 |
aatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacatttcacgtg---cacgattg---tttcctccactgtttcctccaggaaaacg |
43012989 |
T |
|
| Q |
311 |
atcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
409 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43012988 |
atcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
43012890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 25203512 - 25203934
Alignment:
| Q |
14 |
acctgtgtccacatc---atcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattga |
110 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
25203512 |
acctgtgtccacatcttcatcattcaacactcttacttcattttcatcttcggaatcatcctcaagcaccataacacgcaaatttttatccgtacattga |
25203611 |
T |
|
| Q |
111 |
tgacgtggatgatacggacctccacatttaaaacatagtccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgcc |
210 |
Q |
| |
|
| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
25203612 |
taacgaggatgatacgggcctccacatttaaaacagagtccttttttacgacggtcagcaatctcctgtgaagacagattcctcacattcttgtcacgcc |
25203711 |
T |
|
| Q |
211 |
aatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacg |
310 |
Q |
| |
|
||||| | ||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| | |
|
|
| T |
25203712 |
aatttccaatgttggtagtgtgtgttttgttttgtctaacattaaacattccacgcaaaccacctatggatcttcctccactgtttcctccaggaaaatg |
25203811 |
T |
|
| Q |
311 |
atcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtgaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25203812 |
atcacgattgtctttgttattacgaaccataacccaatcgccctttctaccttcattttgtgtaacaaccttgttaccaaaaacaggtcgagatagtgaa |
25203911 |
T |
|
| Q |
411 |
ccatgtgatcttcgtgatgtcca |
433 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
25203912 |
ccatgtgaccttctcgatgtcca |
25203934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 194 - 433
Target Start/End: Complemental strand, 35075035 - 35074796
Alignment:
| Q |
194 |
cacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactg |
293 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
35075035 |
cacattcttgtcacgccaatttccagtgttggcagtgtgtgttttgttttgtcgaacattaaacattccacgtgcaccacctgtgaattttcctcaactg |
35074936 |
T |
|
| Q |
294 |
tttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaa |
393 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35074935 |
tttcctccaagaaaacgatcatgattgtctttgttattatgaaccataacccgatcgccatttctaccttcattctgtgtgacaaccttgttaccaaaaa |
35074836 |
T |
|
| Q |
394 |
cgggtcgagatagtgaaccatgtgatcttcgtgatgtcca |
433 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
35074835 |
tgggtcgagatagtgaaccatgtgaccttcgcgatgtcca |
35074796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Original strand, 25676383 - 25676775
Alignment:
| Q |
14 |
acctgtgtccacatc---atcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattga |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25676383 |
acctgtgtccacatcttcatcattcaacactcttacttcattttcatcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattga |
25676482 |
T |
|
| Q |
111 |
tgacgtggatgatacggacctccacatttaaaacatagtccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
25676483 |
tgacgtggatgatacggacctccacatttaaaacagagtcctttttgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgcc |
25676582 |
T |
|
| Q |
211 |
aatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacg |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
25676583 |
aatttgcagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtg---cacgattg---tttcctccactgtttcctccaggaaaacg |
25676676 |
T |
|
| Q |
311 |
atcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
409 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25676677 |
atcacgattgtctttgttattacgaatcataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
25676775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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