View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12320_low_5 (Length: 378)

Name: NF12320_low_5
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12320_low_5
NF12320_low_5
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-376)||(162772-163129)
[»] chr3 (14 HSPs)
chr3 (16-376)||(17738665-17739022)
chr3 (16-376)||(19039985-19040342)
chr3 (216-358)||(15262418-15262560)
chr3 (16-295)||(12508554-12508832)
chr3 (140-362)||(12843227-12843449)
chr3 (84-370)||(13028414-13028699)
chr3 (216-362)||(19727544-19727690)
chr3 (201-322)||(14578606-14578727)
chr3 (301-360)||(23415075-23415134)
chr3 (181-295)||(15012923-15013037)
chr3 (301-362)||(16804232-16804293)
chr3 (18-54)||(14290523-14290559)
chr3 (18-54)||(35983283-35983319)
chr3 (16-108)||(47126992-47127084)
[»] scaffold0046 (3 HSPs)
scaffold0046 (16-378)||(110-469)
scaffold0046 (235-378)||(12315-12458)
scaffold0046 (18-54)||(70610-70646)
[»] chr1 (10 HSPs)
chr1 (16-378)||(20921606-20921965)
chr1 (80-368)||(16379268-16379556)
chr1 (267-378)||(21045208-21045319)
chr1 (264-368)||(22116942-22117046)
chr1 (296-360)||(21176610-21176674)
chr1 (301-362)||(24784975-24785036)
chr1 (301-360)||(21228674-21228733)
chr1 (309-362)||(22401772-22401825)
chr1 (90-190)||(20074616-20074716)
chr1 (282-362)||(21752227-21752307)
[»] chr6 (10 HSPs)
chr6 (16-376)||(18659934-18660294)
chr6 (73-337)||(18325914-18326178)
chr6 (90-362)||(23084805-23085077)
chr6 (216-365)||(18182494-18182643)
chr6 (16-376)||(30677930-30678290)
chr6 (285-370)||(25958928-25959013)
chr6 (84-362)||(23081452-23081730)
chr6 (301-343)||(19867735-19867777)
chr6 (301-347)||(25756806-25756852)
chr6 (140-189)||(25771046-25771095)
[»] scaffold0429 (1 HSPs)
scaffold0429 (16-331)||(1186-1501)
[»] scaffold0230 (1 HSPs)
scaffold0230 (73-337)||(18177-18441)
[»] scaffold0001 (2 HSPs)
scaffold0001 (216-372)||(441836-441992)
scaffold0001 (285-362)||(496214-496291)
[»] scaffold0040 (1 HSPs)
scaffold0040 (216-367)||(18034-18185)
[»] scaffold0100 (1 HSPs)
scaffold0100 (16-376)||(16373-16733)
[»] scaffold0529 (1 HSPs)
scaffold0529 (210-376)||(5268-5434)
[»] scaffold0010 (1 HSPs)
scaffold0010 (216-378)||(5093-5255)
[»] scaffold0018 (2 HSPs)
scaffold0018 (90-362)||(23136-23408)
scaffold0018 (16-362)||(9115-9461)
[»] chr7 (7 HSPs)
chr7 (21-376)||(15627664-15628019)
chr7 (301-360)||(11984148-11984207)
chr7 (301-347)||(9591533-9591579)
chr7 (264-368)||(12203796-12203900)
chr7 (16-52)||(16947220-16947256)
chr7 (16-108)||(40924565-40924657)
chr7 (16-108)||(49155710-49155802)
[»] scaffold0331 (1 HSPs)
scaffold0331 (216-362)||(14943-15089)
[»] chr4 (5 HSPs)
chr4 (90-376)||(14697252-14697538)
chr4 (216-361)||(16219354-16219499)
chr4 (216-361)||(16222674-16222819)
chr4 (81-343)||(14162654-14162916)
chr4 (301-360)||(13513517-13513576)
[»] chr2 (7 HSPs)
chr2 (16-362)||(24817141-24817487)
chr2 (114-295)||(19647752-19647933)
chr2 (169-295)||(19817683-19817809)
chr2 (301-362)||(23029047-23029108)
chr2 (301-347)||(22463067-22463113)
chr2 (301-343)||(22742552-22742594)
chr2 (309-362)||(22733368-22733421)
[»] chr5 (8 HSPs)
chr5 (216-376)||(21631542-21631702)
chr5 (216-346)||(23474308-23474437)
chr5 (169-295)||(21410298-21410424)
chr5 (277-362)||(21332190-21332275)
chr5 (268-362)||(26735922-26736016)
chr5 (301-362)||(23526148-23526209)
chr5 (309-362)||(25429518-25429571)
chr5 (16-108)||(14883934-14884026)
[»] scaffold0074 (1 HSPs)
scaffold0074 (216-378)||(6291-6453)
[»] scaffold0042 (2 HSPs)
scaffold0042 (90-342)||(26566-26818)
scaffold0042 (301-362)||(36869-36930)
[»] scaffold0282 (2 HSPs)
scaffold0282 (285-376)||(13512-13603)
scaffold0282 (16-56)||(9886-9926)
[»] scaffold0012 (1 HSPs)
scaffold0012 (216-362)||(216384-216530)
[»] chr8 (12 HSPs)
chr8 (216-362)||(22523741-22523887)
chr8 (201-362)||(22421282-22421443)
chr8 (297-376)||(22245500-22245579)
chr8 (297-376)||(22245918-22245997)
chr8 (250-378)||(3274381-3274509)
chr8 (90-362)||(22990276-22990548)
chr8 (301-362)||(21164027-21164088)
chr8 (90-189)||(3274510-3274608)
chr8 (169-316)||(22710627-22710774)
chr8 (18-52)||(21928969-21929003)
chr8 (302-347)||(15536629-15536674)
chr8 (301-346)||(30310633-30310678)
[»] scaffold0342 (1 HSPs)
scaffold0342 (216-362)||(14229-14376)
[»] scaffold0270 (2 HSPs)
scaffold0270 (264-362)||(7067-7165)
scaffold0270 (264-362)||(14197-14295)
[»] scaffold0148 (1 HSPs)
scaffold0148 (85-295)||(2260-2470)
[»] scaffold0077 (1 HSPs)
scaffold0077 (90-362)||(57452-57724)
[»] scaffold0293 (1 HSPs)
scaffold0293 (216-378)||(15588-15750)
[»] scaffold0017 (2 HSPs)
scaffold0017 (169-295)||(24567-24693)
scaffold0017 (303-340)||(17117-17154)
[»] scaffold0011 (1 HSPs)
scaffold0011 (216-362)||(23497-23643)
[»] scaffold0035 (1 HSPs)
scaffold0035 (114-295)||(40970-41151)
[»] scaffold0447 (1 HSPs)
scaffold0447 (84-362)||(1696-1974)
[»] scaffold0383 (1 HSPs)
scaffold0383 (84-362)||(4560-4838)
[»] scaffold0006 (1 HSPs)
scaffold0006 (264-362)||(104421-104519)
[»] scaffold0507 (1 HSPs)
scaffold0507 (201-368)||(11216-11383)
[»] scaffold0161 (1 HSPs)
scaffold0161 (255-362)||(36025-36132)
[»] scaffold0451 (1 HSPs)
scaffold0451 (301-360)||(14081-14140)
[»] scaffold0177 (2 HSPs)
scaffold0177 (301-360)||(11405-11464)
scaffold0177 (301-360)||(15090-15149)
[»] scaffold0044 (1 HSPs)
scaffold0044 (301-360)||(17356-17415)
[»] scaffold0285 (1 HSPs)
scaffold0285 (301-347)||(5207-5253)
[»] scaffold0505 (1 HSPs)
scaffold0505 (94-219)||(2089-2214)
[»] scaffold0022 (2 HSPs)
scaffold0022 (277-362)||(41826-41911)
scaffold0022 (277-362)||(75546-75631)
[»] scaffold0120 (1 HSPs)
scaffold0120 (282-362)||(14278-14358)
[»] scaffold0080 (1 HSPs)
scaffold0080 (282-362)||(54831-54911)
[»] scaffold0008 (1 HSPs)
scaffold0008 (301-360)||(46-105)
[»] scaffold1517 (1 HSPs)
scaffold1517 (84-190)||(1319-1425)
[»] scaffold0266 (1 HSPs)
scaffold0266 (81-179)||(17014-17112)
[»] scaffold0009 (1 HSPs)
scaffold0009 (301-347)||(229901-229947)
[»] scaffold0130 (1 HSPs)
scaffold0130 (19-72)||(3659-3712)
[»] scaffold0102 (1 HSPs)
scaffold0102 (301-346)||(50394-50439)
[»] scaffold0297 (1 HSPs)
scaffold0297 (301-337)||(7706-7742)
[»] scaffold0289 (1 HSPs)
scaffold0289 (301-337)||(7-43)
[»] scaffold0276 (1 HSPs)
scaffold0276 (16-108)||(23687-23779)
[»] scaffold0122 (1 HSPs)
scaffold0122 (306-362)||(40561-40617)
[»] scaffold0081 (2 HSPs)
scaffold0081 (301-337)||(21823-21859)
scaffold0081 (301-337)||(37247-37283)
[»] scaffold0041 (1 HSPs)
scaffold0041 (16-108)||(42183-42275)


Alignment Details
Target: scaffold0007 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 162772 - 163129
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||    
T  162772 gcagaatctatgaggaggataccaaagcacattacaaagctgtaagtgaaaagaagagtaagaatcaacagagtcgtcataagccttacaatgattccgc 162871  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||     
T  162872 tgataaggaggagcaaaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaag 162971  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||   ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  162972 agtaatgcttgtac---tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaatt 163068  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||    
T  163069 gcaatgaagagggtcatattggttctcaatgcgagaaacctaagaagactcaaactagtgg 163129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 17739022 - 17738665
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||  ||||||||    
T  17739022 gcagaatctatgaggaggataccaaagcacattacaaagctgtaagtgaaaagaagagtaagaatcaacagagtcgtcataagccttacaacgattccgc 17738923  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||     
T  17738922 tgataaggatgaacaaaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaag 17738823  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||   ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  17738822 agtaatgcttgtac---tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaatt 17738726  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  17738725 gcaatgaagagggtcatattggatcgcaatgcgagaaacctaagaagactcaaactagtgg 17738665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 19040342 - 19039985
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||    
T  19040342 gcagaatctatgaggaggataccaaagcacattacaaagctgtaagtgaaaagaagagtaagaatcaacagagtcgtcataagccttacaatgattccgc 19040243  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||     
T  19040242 tgataaggatgaacaaaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaag 19040143  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||   ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19040142 agtaatgcttgtac---tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaatt 19040046  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||    
T  19040045 gcaatgaagagggtcatattggttctcaatgcgagaaacctaagaagactcaaactagtgg 19039985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 358
Target Start/End: Complemental strand, 15262560 - 15262418
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||  ||||||||| |  |||||||||||  |||| |||||||||||||| |||||||||||||||||||    
T  15262560 agtaatgcttgtcctggggatgtgaaacggtgtttccgttgtggtaagaaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaatt 15262461  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaa 358  Q
    ||||||| || || |||||||||||||||||| |||| |||||    
T  15262460 gcaatgaggaaggacatattgggtcgcaatgcaagaagcctaa 15262418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 12508554 - 12508832
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    |||||||||||||  ||||||| ||||| |||||||| ||||| ||||| | ||   |||||| ||| || || ||||| ||||||||||||| | | ||    
T  12508554 gcagaatctatgagaaggatacgaaagctcattacaaggctatgagtgagaggaaaggtaagagtcagcaaagtcgtccaaagccttacagtgctccggc 12508653  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||| ||||||||  |||| |||||||||||| || |  | ||| ||  |||||||||| ||||| ||||| ||||| ||||| || ||||| ||     
T  12508654 tgataagggtgagcagagggtgaatgatgagaagaggcccataaagaaggatactcctactgaagttgtttgttaccgatgtggagaaaaaggtcataag 12508753  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatga 295  Q
    ||||| ||||||  ||| |||||||||||||||  |||||||||||| ||||| ||||  ||||| || || ||||||||    
T  12508754 agtaacgcttgtggtggcgatgtgaagcggtgt-tccgttgtggcaggaaaggacatataattgcggattgcaagcatga 12508832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 140 - 362
Target Start/End: Original strand, 12843227 - 12843449
Alignment:
Q  140 tgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtg 239  Q
    |||||||| | | |||| || |||||| ||||||  |||| ||||||| |||   || || ||||| || ||||| |||||||||||| |||| ||||||    
T  12843227 tgatgagaggcggcctaggaagaaagatgctcctgttgagattgtctgctatacttgtggtgagaaaggccacaagagtaatgcttgtcctggagatgtg 12843326  T
Q  240 aagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggt 339  Q
    || ||||||  ||||||||| |  |||||||||||  |||| ||||||||  |||| ||||||||||  || |||||||||||||| ||||||||||| |    
T  12843327 aaacggtgtttccgttgtggtaagaaagggcatacacttgctgagtgtaaagatgatgatgttgtgttctttaattgcaatgaagaaggtcatattggtt 12843426  T
Q  340 cgcaatgcgagaaacctaagaag 362  Q
    |||||||| |||| |||||||||    
T  12843427 cgcaatgcaagaatcctaagaag 12843449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 370
Target Start/End: Original strand, 13028414 - 13028699
Alignment:
Q  84 cagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttg 183  Q
    ||||| ||||| ||||||||||||  | | |||||||||  |||||||| ||||| |||||||| | || | ||||||||||||  |||||| || ||||    
T  13028414 cagagtcgtccaaagccttacagtc-tcctgctgataagagtgagcagagagtgaatgatgagaggggaaccaagaggaaagagaatcctaccgaagttg 13028512  T
Q  184 tctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcaga 283  Q
    | ||||| ||||| |||||||| || ||||| ||||||| ||| | ||||||   ||||  |||   ||| |||| ||  || ||||||||||| || ||    
T  13028513 tttgttaccgatgtggagagaaaggccacaagagtaatgtttgcaatggtgaaaagaagaagtgcttccgatgtgccaagaaggggcatacgatagcgga 13028612  T
Q  284 gtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggc 370  Q
     ||||| ||||| ||| ||||||||||||| ||||| || || || |||||| | ||||| ||| |||| ||||||||| |||||||    
T  13028613 atgtaaccatgaggatattgtgtgtttcaactgcaaagaggaaggacatattagttcgcagtgcaagaagcctaagaaggctcaggc 13028699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 19727690 - 19727544
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||| |||||| |||| ||||| ||| |||||   |||||||| |  || || |||||  |||| || ||||||||||| |||||||| ||||||||||    
T  19727690 agtaacgcttgtcctggggatgtaaagaggtgttttcgttgtggtaagaagggacatacacttgccgaatgtaagcatgatgatgttgtatgtttcaatt 19727591  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||||||||| ||||||||  |||| |||||||||    
T  19727590 gcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaag 19727544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 14578606 - 14578727
Alignment:
Q  201 gagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatg 300  Q
    ||||| || ||||| |||||||||||| |||| ||||||||| |||||  ||||||||| |  ||||| |||||  |||| |||||||| ||||| |||     
T  14578606 gagaaaggccacaagagtaatgcttgtcctggggatgtgaagaggtgtttccgttgtggtaagaaaggtcatacacttgctgagtgtaaacatgatgata 14578705  T
Q  301 ttgtgtgtttcaattgcaatga 322  Q
    | || || ||||||||||||||    
T  14578706 tagtatgcttcaattgcaatga 14578727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 23415075 - 23415134
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||| || | |||||||    
T  23415075 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgcaagcagcctaaga 23415134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 15012923 - 15013037
Alignment:
Q  181 ttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgc 280  Q
    |||| ||||| ||||| |||||||| ||||| || |||||  |||||| |||||||||||| | ||||   |||||||| || || || ||||| |||||    
T  15012923 ttgtttgttaccgatgtggagagaaaggtcataagagtaacacttgtattggtgatgtgaaacagtgttttcgttgtggtaggaagggacatacaattgc 15013022  T
Q  281 agagtgtaagcatga 295  Q
    ||| || ||||||||    
T  15013023 agattgcaagcatga 15013037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 16804232 - 16804293
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| |||||||  |||||||||||||||||||| || |||||| || | |||||||||    
T  16804232 ttgtgtgcttcaattttaatgaagagggtcatattggttcccaatgcaagcagcctaagaag 16804293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 14290523 - 14290559
Alignment:
Q  18 agaatctatgaagaggataccaaagcacattacaaag 54  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  14290523 agaatctatgaagaggataccaaagctcattataaag 14290559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 35983319 - 35983283
Alignment:
Q  18 agaatctatgaagaggataccaaagcacattacaaag 54  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  35983319 agaatctatgaagaggataccaaagctcattataaag 35983283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 47127084 - 47126992
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||||| ||||| ||   ||| ||||| | |||| |||||   |||||||  |||||||||||||||||||    
T  47127084 gcagaatctatgaagaagacaccaaagctcattataagattatgagtgagaggaggggtaagggacaacagaatcgtcctaagccttacagtg 47126992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 469 - 110
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||| || | ||||    
T  469 gcagaatctatgaagtggataccaaagcacattacaaagctgtaagtgaaaagaagggtaagaatcaacagagtcgtcctaagccttacaatgctcccgc 370  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagag-acctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaa 214  Q
    ||||||||||||||||||||||  |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  369 tgataaggatgagcagaaagtgtttgatga-aagaggacccaagaggaaagaggctcctactgaagttgtctgttaccgatgtggagagaagggtcacaa 271  T
Q  215 aagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaat 314  Q
     |||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  270 gagtaatgcttgtacta---atgtgaagcggtgtacccgttgtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaat 174  T
Q  315 tgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173 tgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 235 - 378
Target Start/End: Complemental strand, 12458 - 12315
Alignment:
Q  235 atgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatat 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12458 atgtgaagcggtgtacccgttgtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatat 12359  T
Q  335 tgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12358 tgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 12315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 70646 - 70610
Alignment:
Q  18 agaatctatgaagaggataccaaagcacattacaaag 54  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  70646 agaatctatgaagaggataccaaagctcattataaag 70610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 20921965 - 20921606
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||| | ||||    
T  20921965 gcagaatctatgaagaggataccaaagcacattacaaagctgtaagtgaaaagaagggtaagaatcaacagagtcgtcctaagccttacagtgctcccgc 20921866  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    ||||||||||||| ||||||||| ||||||||   |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||     
T  20921865 tgataaggatgagtagaaagtgattgatgagagaggacccaagaggaaagaggctcctactgaagttgtctgttaccgatgcggagagaagggtcacaag 20921766  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||| ||||||||    | |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| || |    
T  20921765 agtaattcttgtacta---acgtgaagtggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatattgtgtgttttaaat 20921669  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  20921668 gcaatgaagagggtcatattgggttgcaatgtgagaaacctaagaagactcaggctagtggaa 20921606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 368
Target Start/End: Complemental strand, 16379556 - 16379268
Alignment:
Q  80 tcaacagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgag 179  Q
    ||||||||| |||||||||||||||||||  || ||||||||||   | |||| ||| | |||||||| ||| || |  | |||||| | |  | |||||    
T  16379556 tcaacagagtcgtcctaagccttacagtgcctctgctgataagggcaaacagagagttaatgatgagaggaggccgagaaagaaagatgttgttgctgag 16379457  T
Q  180 gttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattg 279  Q
     |||| || |||   || || ||||| || ||||||||||||| ||||||||| ||||||||  |||||  ||||||||| |  ||||| |||||| ||     
T  16379456 attgtttgctatgcttgtggtgagaaaggccacaaaagtaatgtttgtactggagatgtgaaatggtgtttccgttgtggtaagaaaggacatacgcttc 16379357  T
Q  280 cagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcag 368  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  ||||||||  |||| || |||||| |||||    
T  16379356 cagagtgtaagcatgatgatattgtgtgtttcaattgcaatgaagagggtcacattgtttcgcaatgtaagaagccaaagaaggctcag 16379268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 267 - 378
Target Start/End: Original strand, 21045208 - 21045319
Alignment:
Q  267 gggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactc 366  Q
    ||||||||  ||||||| |||||||| || ||||| ||||||||||||| ||||||||| ||||||||||  || |||||||||||||||||||||||||    
T  21045208 gggcatactcttgcagaatgtaagcacgatgatgtggtgtgtttcaattacaatgaagaaggtcatattgtttcacaatgcgagaaacctaagaagactc 21045307  T
Q  367 aggctagtggaa 378  Q
    || |||||||||    
T  21045308 agactagtggaa 21045319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 22117046 - 22116942
Alignment:
Q  264 aaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaaga 363  Q
    |||||||||||  |||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| || |||||| ||||||| |||||||    
T  22117046 aaagggcatactcttgctgaatgtaagcatgatgatgttgtatgtttcaattgcaatgaggaaggtcatattggatcccaatgcaagaaaccgaagaaga 22116947  T
Q  364 ctcag 368  Q
    |||||    
T  22116946 ctcag 22116942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 21176674 - 21176610
Alignment:
Q  296 agatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    |||| ||||||| ||||||||||||||||||||||||||||| || |||||| || | |||||||    
T  21176674 agatattgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 21176610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 24784975 - 24785036
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||||||||||||||||||||||||||| ||||| || || ||| || | |||||||||    
T  24784975 ttgtgtgtttcaattgcaatgaagagggtcacattggttctcagtgcaagcagcctaagaag 24785036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 21228674 - 21228733
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | |||||||    
T  21228674 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaaga 21228733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 22401825 - 22401772
Alignment:
Q  309 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||| |||||||||||||| ||||| ||||| ||| |||| |||||||||    
T  22401825 ttcaattgtaatgaagagggtcacattggttcgcagtgcaagaagcctaagaag 22401772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 20074616 - 20074716
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||||||||||||||||| ||| ||||| || |   |||||||  |||||||||| | ||| | |||||||| ||| ||||| |||||| |||| ||||    
T  20074616 cgtcctaagccttacagtgcttctgctgacaaaggaaagcagaagatgagtgatgacaggaggcttaagaggagagatgctcccactgagattgtgtgtt 20074715  T
Q  190 a 190  Q
    |    
T  20074716 a 20074716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 21752307 - 21752227
Alignment:
Q  282 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||| || ||||| ||| ||||||||||||||||||| || || ||||| ||||| || || ||| |||| |||||||||    
T  21752307 gagtgcaaacatgatgatattgtgtgtttcaattgcaacgaggaaggtcacattggttcacagtgcaagaagcctaagaag 21752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 18660294 - 18659934
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| |||||||| ||||| |||||||| ||| | ||||| | ||   |||||| ||| || || ||||| ||||||||||||| | | ||    
T  18660294 gcagaatctatgaggaggatacgaaagctcattacaaggctgtgagtgagaggaaaggtaagagtcagcaaagtcgtccaaagccttacagtgctcctgc 18660195  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||| ||||||||  || | |||||||| | |||| ||||||||||||  ||||||||| ||||| ||||| ||||| ||||||||  |||||||     
T  18660194 tgataagggtgagcagagggttaatgatgagaggggacccaagaggaaagagaatcctactgaagttgtttgttaccgatgtggagagaaatgtcacaag 18660095  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||||||||| |    
T  18660094 agtaatgcttgtactggtgatgcgaagcggtgttcccgttgtggcagaaaagggcatacaattgcagattgcaagcatgaaaatgtggtgtgtttcaact 18659995  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    | |||||||| ||||| ||||| || || ||  ||||||||| |||  ||||| |||||||    
T  18659994 gtaatgaagaaggtcacattggttctcagtgtaagaaacctaggaaagctcagtctagtgg 18659934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 73 - 337
Target Start/End: Complemental strand, 18326178 - 18325914
Alignment:
Q  73 gtaagaatcaacagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcc 172  Q
    |||||||||||||||| ||||||||| ||||||||| | | ||| |||||| |||| ||   |||| |||||||| | |||| ||||||||||||  |||    
T  18326178 gtaagaatcaacagagtcgtcctaagtcttacagtgctccagctaataagggtgagaagggggtgaatgatgagacgggacccaagaggaaagagattcc 18326079  T
Q  173 tactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcat 272  Q
     ||||| ||||| ||||| ||||| |||||||| |||||||| | |||||||||||||||| |||||||||||||| |||||||||| |||||||| |||    
T  18326078 aactgaagttgtttgttaccgatgtggagagaaaggtcacaagaataatgcttgtactggtaatgtgaagcggtgttcccgttgtggtagaaaaggacat 18325979  T
Q  273 acgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
     | |||||||| || |||||||| ||||| ||||||||||| || |||||||| ||||| |||||    
T  18325978 gcaattgcagattgcaagcatgatgatgtggtgtgtttcaactgtaatgaagaaggtcacattgg 18325914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 362
Target Start/End: Original strand, 23084805 - 23085077
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||||||||||||||||| | |  ||||||||| | | || | ||||| ||||||||   ||||||  | ||||||  || || |||||||||| || |    
T  23084805 cgtcctaagccttacagtgctcctcctgataagggtaaacaaagagtgaatgatgagagaggacctagaaagaaagatactactgctgaggttgtttgct 23084904  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   || || ||||| || || || |||||||||||| || | |||||||| ||||||  ||||||||| |  ||||||||||| ||| |||| |||||    
T  23084905 atacttgtggtgagaaaggccataagagtaatgcttgtgctagagatgtgaaacggtgtttccgttgtggtaagaaagggcatactattacagaatgtaa 23085004  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| |||||||||||||| ||||| |||||||||| ||||||||| ||||| ||| |||| |||| ||||    
T  23085005 gcatgatgatgttgtgtgttttaattgaaatgaagaggttcatattggttcgcagtgcaagaagcctatgaag 23085077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 365
Target Start/End: Original strand, 18182494 - 18182643
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||| | |||||||| ||||||  ||||||||| |  ||||| |||||| || || | ||||||||||| |||||||| || || || |    
T  18182494 agtaatgcttgtacttgggatgtgaaacggtgtttccgttgtggtaagaaaggacatacgcttacataatgtaagcatgatgatgttgtatgctttaact 18182593  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagact 365  Q
    ||||||||||||||||||||||||| |||||| ||||| | |||||||||    
T  18182594 gcaatgaagagggtcatattgggtcacaatgcaagaaatcaaagaagact 18182643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 30677930 - 30678290
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    |||| |||||||| || |||||||||||  ||||||| | ||| |||||   |||| |||||| ||| ||||  ||||| ||||||||||  | | | ||    
T  30677930 gcaggatctatgaggaagataccaaagctaattacaaggttatgagtgagcggaggggtaagagtcagcagaatcgtccaaagccttacaacgctcctgc 30678029  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    ||||||   | |||| |  |||| |||||||| ||| ||||  | ||||||  ||||| |||||||||| || ||    || || |||||| | |||||     
T  30678030 tgataaatgtaagcaaagggtgaatgatgagaggaggcctagaaagaaagatactcctgctgaggttgtttgctacaagtgtggtgagaagagccacaag 30678129  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||| ||||  |||||||| ||| ||||||    ||||||| |  |||||||| |  ||| ||||||| |||||||| ||| |  |||||||||| |    
T  30678130 agtaatgtttgtcttggtgatgcgaaacggtgtttttgttgtggtaagaaagggcaaattattacagagtgcaagcatgatgatatgatgtgtttcaact 30678229  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    | |||||||| ||||| ||||| ||||| ||| |||| ||||||||| |||||||||||||    
T  30678230 gtaatgaagaaggtcacattggttcgcagtgcaagaagcctaagaaggctcaggctagtgg 30678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 25958928 - 25959013
Alignment:
Q  285 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggc 370  Q
    ||||||||||||||| | ||||||||||| ||||||||||| || || ||||| ||||| ||| |||| ||||||||| |||||||    
T  25958928 tgtaagcatgaagatatagtgtgtttcaactgcaatgaagaaggacacattggttcgcagtgcaagaagcctaagaagcctcaggc 25959013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 362
Target Start/End: Complemental strand, 23081730 - 23081452
Alignment:
Q  84 cagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttg 183  Q
    ||||| ||||| ||||||||||||| | | |||||||| |   |||| | ||| | |||||||| | | |||| || |||||| ||||||  |||| |||    
T  23081730 cagagtcgtccaaagccttacagtgctgctgctgataaaggaaagcaaagagttaatgatgagaggcggcctaggaagaaagatgctcctgttgagattg 23081631  T
Q  184 tctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcaga 283  Q
    | ||||||   || || ||||| || ||||| |||||||||||| |||| || |||||  | |||   |||||||| |  |||||||||||  |||  ||    
T  23081630 tttgttatacttgtggtgagaaaggccacaagagtaatgcttgtcctggggacgtgaaaagatgttttcgttgtggaaagaaagggcatacacttgttga 23081531  T
Q  284 gtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
     ||||| ||||| ||| ||||||||||||||||||||||  | ||||| ||||| ||||| | | |||| |||||||||    
T  23081530 ttgtaaacatgatgatattgtgtgtttcaattgcaatgagaaaggtcacattggttcgcagtacaagaagcctaagaag 23081452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 19867777 - 19867735
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 343  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||    
T  19867777 ttgtgtgcttcaattgcaatgaagagggtcacattggttcgca 19867735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 25756806 - 25756852
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    ||||||| |||||||||||||| |||||||||||||| || ||||||    
T  25756806 ttgtgtgcttcaattgcaatgaggagggtcatattggttcccaatgc 25756852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 25771095 - 25771046
Alignment:
Q  140 tgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    |||||||| ||| |||||||||| ||| |||||||||||| |||||||||    
T  25771095 tgatgagaggaggcctaagaggagagatgctcctactgagattgtctgtt 25771046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 1186 - 1501
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| |||||||| ||||| ||| |||| ||| | ||||| | ||   |||||| ||||||||  ||||| ||||||||||||  | | ||    
T  1186 gcagaatctatgaggaggatacgaaagctcatcacaaggctgtgagtgagaggaaaggtaagagtcaacagaatcgtccaaagccttacagtactcctgc 1285  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||| ||||||||  |||| |||||||| | |||| ||||||||||||  ||||||||| ||||| ||||| ||||| |||||||| ||||||||     
T  1286 tgataagggtgagcagagggtgaatgatgagaggggacccaagaggaaagagaatcctactgaagttgtttgttaccgatgaggagagaaaggtcacaag 1385  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| |    
T  1386 agtaatggttgtactggtgatgtgaagcggtgttcccattgtggcagaaaagggcatacaattgcagattgcaagcatgaagatgtggtgtgtttcaact 1485  T
Q  316 gcaatgaagagggtca 331  Q
    | |||||||| |||||    
T  1486 gtaatgaagaaggtca 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 73 - 337
Target Start/End: Original strand, 18177 - 18441
Alignment:
Q  73 gtaagaatcaacagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcc 172  Q
    |||||||||||||||| ||||||||| ||||||||| | | ||| |||||| |||| ||   |||| |||||||| | |||| ||||||||||||  |||    
T  18177 gtaagaatcaacagagtcgtcctaagtcttacagtgctccagctaataagggtgagaagggggtgaatgatgagacgggacccaagaggaaagagattcc 18276  T
Q  173 tactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcat 272  Q
     ||||| ||||| ||||| ||||| |||||||| |||||||| | |||||||||||||||| |||||||||||||| |||||||||| |||||||| |||    
T  18277 aactgaagttgtttgttaccgatgtggagagaaaggtcacaagaataatgcttgtactggtaatgtgaagcggtgttcccgttgtggtagaaaaggacat 18376  T
Q  273 acgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
     | |||||||| || |||||||| ||||| ||||||||||| || |||||||| ||||| |||||    
T  18377 gcaattgcagattgcaagcatgatgatgtggtgtgtttcaactgtaatgaagaaggtcacattgg 18441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 372
Target Start/End: Complemental strand, 441992 - 441836
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||||| |||||||| ||||||  ||||||||| |  ||||||||||| ||| |||| ||||| ||||| |||||||||||||| || |    
T  441992 agtaatgcttgtactggagatgtgaaacggtgtttccgttgtggtaagaaagggcatactattacagaatgtaaacatgatgatgttgtgtgttttaact 441893  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggcta 372  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||| | |||||||    
T  441892 gcaatgaagagggtcatattggttcgcaatgcaagaagcctaagaaggcgcaggcta 441836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 496291 - 496214
Alignment:
Q  285 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||||||| |||||||| ||||| || |||||||| || ||| ||||||| || |||||  |||| |||||||||    
T  496291 tgtaagcatgatgatgttgtatgttttaactgcaatgaggaaggttatattggttcacaatgtaagaagcctaagaag 496214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 216 - 367
Target Start/End: Complemental strand, 18185 - 18034
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||||||||||  ||||||||| |  ||||| |||||| || |||||||||||||||| |||||||| ||||| || |    
T  18185 agtaatgcttgttctggggatgtgaagcggtgtttccgttgtggtaagaaaggacatacgcttacagagtgtaagcatgatgatgttgtatgttttaact 18086  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactca 367  Q
    | |||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  18085 gtaatgaagaaggtcatattgagtcgcaatgcaagaaacctaagaagactca 18034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 16373 - 16733
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    |||| |||||||| || ||||||||||| |||||||| | ||| |||||   |||| |||||| ||| ||||| ||||| |||||||| |||| | | ||    
T  16373 gcaggatctatgaggaagataccaaagctcattacaaggttatgagtgagcggaggggtaagagtcagcagagtcgtccaaagccttatagtgctcctgc 16472  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||| | | |||| |  |||| |||||||| ||| ||||  | ||||||  ||||| |||||||||| || ||    || || |||||||| |||||     
T  16473 tgataaaggtaagcaaagggtgaatgatgagaggaggcctagaaagaaagatactcctgctgaggttgtttgctacaagtgtggtgagaagggccacaag 16572  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||||||||| || ||||||  || |||||| || ||||||||||| |||  |||||| ||| |||| ||| |  |||||||||| |    
T  16573 agtaatgcttgtcctggtgatgtaaaacggtgtttccattgtggtaggaaagggcatactattatagagtgcaagaatgatgatatgatgtgtttcaact 16672  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
      |||||||| ||||| ||||| ||||| ||| |||| ||||||||||||||||| |||||    
T  16673 ataatgaagaaggtcacattggttcgcagtgcaagaagcctaagaagactcaggccagtgg 16733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 376
Target Start/End: Complemental strand, 5434 - 5268
Alignment:
Q  210 cacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtt 309  Q
    ||||| ||||||||||||||||| |||||||| | ||||  ||||||||| |  ||||||||||| ||| |||| ||||||||||| ||||| |||||||    
T  5434 cacaagagtaatgcttgtactggggatgtgaaacagtgtttccgttgtggtaagaaagggcatactattacagaatgtaagcatgatgatgtggtgtgtt 5335  T
Q  310 tcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||| ||||||||||| ||||||||||| ||||| ||| |||| ||||||||| ||||  |||||||    
T  5334 tcaaatgcaatgaagaaggtcatattggttcgcagtgcaagaagcctaagaaggctcaaactagtgg 5268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 378
Target Start/End: Complemental strand, 5255 - 5093
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||   | |||||| |  || || |||||  |||| || ||||||||||| |||||||| ||||| ||||    
T  5255 agtaatgcttgtcctggggatgtgaaacggtgttttcattgtggtaagaagggccatactcttgctgaatgtaagcatgatgatgttgtatgtttaaatt 5156  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  5155 gcaatgaagaaggtcatattgggtcgcaatgcaagaaacctaagaagactcagtctagtggaa 5093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 362
Target Start/End: Original strand, 23136 - 23408
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||||||||||||||||| | | |||||||||| | | |||| | ||| ||||||||  || ||||  | ||||||| || || |||||||||| ||||    
T  23136 cgtcctaagccttacagtgctcctgctgataagggtaaacagagattgaatgatgagagaaggcctagaaagaaagagactactgctgaggttgtttgtt 23235  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   |  || ||||| || || || ||||||||||||| ||| ||| |||| ||||||  |||||||||||  ||||| ||||| ||| |||| |||||    
T  23236 atacttttggtgagaaaggccataagagtaatgcttgtaatggagatctgaaacggtgtttccgttgtggcaagaaaggtcatactattacagaatgtaa 23335  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| || ||||||||||| || ||||| ||||||||||| ||||| ||||||||| |||| |||||||||    
T  23336 gcatgatgacgttgtgtgttttaactgcaacgaagagggtcacattggttcgcaatgcaagaagcctaagaag 23408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 9115 - 9461
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| || ||||| ||||| |||||||| ||| | | ||| |||||   || ||||||||| |  |  ||||||||||| |||| | | ||    
T  9115 gcagaatctatgaggaagatactaaagctcattacaaggctgtgaatgagaagagacctaggaatcaacaaaatctccctaagccttatagtgctcctgc 9214  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||| | | || | | ||| |||||||| ||| ||||  | ||||||  || |||||||| |||| || |||   || || |||||||| |||||     
T  9215 tgataagggtaaacaaagattgaatgatgagaggaggcctagaaagaaagatactactactgagattgtttgctatacttgtggtgagaagggccacaag 9314  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||||| |||||||| |||||   ||||||||| |  || |||||||| ||| |||| ||||||||| | |||||||||||||| || |    
T  9315 agtaatgcttgtactggagatgtgaaacggtgcttccgttgtggtaagaaggggcatactattacagaatgtaagcattatgatgttgtgtgttttaact 9414  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||||||||| || |||||| |||| |||||||||    
T  9415 gcaatgaggaaggtcatattggttcacaatgcaagaagcctaagaag 9461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 15628019 - 15627664
Alignment:
Q  21 atctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgctgata 120  Q
    |||||||| |||||||| ||||| |||||||| | ||| | ||| | ||  ||||||| |||||| || ||||| ||||||||||||| | | |||||||    
T  15628019 atctatgaggaggatacgaaagctcattacaaggttatgaatgagaggaaaagtaagagtcaacaaagtcgtccaaagccttacagtgctcctgctgata 15627920  T
Q  121 aggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaa 220  Q
    ||| | | || |  |||| |||||||||||| ||||  | ||||||  ||||| |||| ||||| || ||    || || ||||| || ||||| |||||    
T  15627919 agggtaaacaaagggtgaatgatgagaagaggcctagaaagaaagatactcctgctgaagttgtttgctacaactgtggtgagaaaggccacaagagtaa 15627820  T
Q  221 tgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaat 320  Q
     ||||||||| | |||||||| | ||||  || |||||| |  ||||||||||| ||| |||| || |||||||| ||||| ||||||||||| ||||||    
T  15627819 cgcttgtacttgggatgtgaaacagtgtttccattgtggtaagaaagggcatactattacagaatgcaagcatgatgatgtggtgtgtttcaactgcaat 15627720  T
Q  321 gaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    ||||||||||||||||| ||||| ||  || | ||||||||| ||||  |||||||    
T  15627719 gaagagggtcatattggttcgcagtgaaagtagcctaagaaggctcaaactagtgg 15627664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 11984207 - 11984148
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||| ||||||||||||||||||||| || |||||| || | |||||||    
T  11984207 ttgtgtgcttcaatttcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 11984148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 9591579 - 9591533
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    ||||||| |||||||| |||||||||||||||||||| || ||||||    
T  9591579 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgc 9591533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 12203796 - 12203900
Alignment:
Q  264 aaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaaga 363  Q
    |||||||||||||| || || || |||| ||| ||| |||| || ||||||||  ||||||| |||||| || | |||||||||  ||| |||||||||     
T  12203796 aaagggcatacgatagctgaatgcaagcgtgatgatattgtttgcttcaattgtgatgaagaaggtcatcttagctcgcaatgcaggaagcctaagaagg 12203895  T
Q  364 ctcag 368  Q
    |||||    
T  12203896 ctcag 12203900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 16947220 - 16947256
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaa 52  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  16947220 gcagaatctatgaagaggatacgaaagctcattacaa 16947256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 40924565 - 40924657
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||||| ||||| ||   ||| ||||| | |||| |||||   |||||||  |||||||||||||||||||    
T  40924565 gcagaatctatgaagaagacaccaaagctcattataagattatgagtgagaggaggggtaagggacaacagaatcgtcctaagccttacagtg 40924657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 49155802 - 49155710
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||||| ||||| ||   ||| ||||| | |||| |||||   |||||||  |||||||||||||||||||    
T  49155802 gcagaatctatgaagaagacaccaaagctcattataagattatgagtgagaggaggggtaagggacaacagaatcgtcctaagccttacagtg 49155710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 14943 - 15089
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||||| |||||||| ||||||  |||||||||||  ||||||||||| ||| || | ||||||||||| |||||||||||||| || |    
T  14943 agtaatgcttgtactggagatgtgaaacggtgtttccgttgtggcaagaaagggcatactattacataatgtaagcatgatgatgttgtgtgttttaact 15042  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||||||| | ||||| | | ||||| ||||||||||||||    
T  15043 gcaatgaagagggttacattggtttggaatgcaagaaacctaagaag 15089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 90 - 376
Target Start/End: Complemental strand, 14697538 - 14697252
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||| ||||||||||||| | | |||||||||| | |||| | | ||| |||||||| ||| ||||  | |||||| ||| || ||||| |||| || |    
T  14697538 cgtccaaagccttacagtgctcctgctgataagggtaagcaaagattgaatgatgagaggaggcctagaaagaaagatgctactgctgagattgtttgct 14697439  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   || || ||||| || || || ||||||||||||  ||| ||| |||| ||||||  || ||| || |  || |||||||| |||||| | |||||    
T  14697438 atacttgtggtgagaaaggccataagagtaatgcttgtcttggggatttgaaacggtgtttccattgcggtaagaaggggcatactattgcaaaatgtaa 14697339  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    ||| || |||||  |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  14697338 gcacgatgatgtgctgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcagactagtgg 14697252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 16219499 - 16219354
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| |||||    |||||||| |  || || |||||  |||  |||||||| ||||| ||||||||||| || ||||    
T  16219499 agtaatgcttgtcctggggatgtgaaacggtgctttcgttgtggtaagaagggacatacacttgttgagtgtaaacatgatgatgttgtgtgctttaatt 16219400  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaa 361  Q
    |||||||||| ||||||||||| ||||||||| |||| ||| ||||    
T  16219399 gcaatgaagaaggtcatattggttcgcaatgcaagaagcctgagaa 16219354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 361
Target Start/End: Complemental strand, 16222819 - 16222674
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| |||||    |||||||| |  || || |||||  |||  |||||||| ||||| ||||||||||| || ||||    
T  16222819 agtaatgcttgtcctggggatgtgaaacggtgctttcgttgtggtaagaagggacatacacttgttgagtgtaaacatgatgatgttgtgtgctttaatt 16222720  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaa 361  Q
    |||||||||| ||||||||||| ||||||||| |||| ||| ||||    
T  16222719 gcaatgaagaaggtcatattggttcgcaatgcaagaagcctgagaa 16222674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 343
Target Start/End: Complemental strand, 14162916 - 14162654
Alignment:
Q  81 caacagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgagg 180  Q
    |||||||| ||||||||||||||||||| | | |||||||||| | | |||| | ||   || || | | | ||||  |||||||| ||||||  ||||     
T  14162916 caacagagtcgtcctaagccttacagtgctcctgctgataagggtaaacagagaatggtcgaggataggcgccctagaaggaaagatgctcctgttgaga 14162817  T
Q  181 ttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgc 280  Q
    ||||||| |||   || || | ||| || ||||| ||| |||||||| |||| ||||||||| | |||   || ||||| |  ||||| |||||  ||||    
T  14162816 ttgtctgctatgcttgtggtgtgaaaggccacaagagtgatgcttgtcctggggatgtgaagagatgttttcgctgtggtaagaaaggtcatacacttgc 14162717  T
Q  281 agagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 343  Q
     |||||||||||||||||||||||||| || ||||||||||| || ||||| ||||| |||||    
T  14162716 tgagtgtaagcatgaagatgttgtgtgctttaattgcaatgaggaaggtcacattggttcgca 14162654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 13513576 - 13513517
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | |||||||    
T  13513576 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaaga 13513517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 24817141 - 24817487
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtgattccgc 115  Q
    ||||||||||||| || ||||| ||||| |||||||| ||| | | ||| |||||   || ||||||||| |  |  ||||||||||| |||| | | ||    
T  24817141 gcagaatctatgaggaagatactaaagctcattacaaggctgtgaatgagaagagacctaggaatcaacaaaatctccctaagccttatagtgctcctgc 24817240  T
Q  116 tgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaa 215  Q
    |||||||| | | || | | ||| |||||||| ||| ||||  | ||||||  || |||||||| |||| || |||   || || |||||||| |||||     
T  24817241 tgataagggtaaacaaagattgaatgatgagaggaggcctagaaagaaagatactactactgagattgtttgctatacttgtggtgagaagggccacaag 24817340  T
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||||| |||||||| |||||   ||||||||| |  || |||||||| ||| |||| ||||||||| | |||||||||||||| || |    
T  24817341 agtaatgcttgtactggagatgtgaaacggtgcttccgttgtggtaagaaggggcatactattacagaatgtaagcattatgatgttgtgtgttttaact 24817440  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||||||||| || |||||| |||| |||||||||    
T  24817441 gcaatgaggaaggtcatattggttcacaatgcaagaagcctaagaag 24817487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 295
Target Start/End: Complemental strand, 19647933 - 19647752
Alignment:
Q  114 gctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcaca 213  Q
    |||||||||| ||| ||||  |||| |||||||| ||| || |  | ||||||  ||||||| || ||||| ||||  ||||| |||||||| |||||||    
T  19647933 gctgataagggtgaacagagggtgaatgatgagaggaggcccataaagaaagatactcctaccgatgttgtttgtttccgatgtggagagaaaggtcaca 19647834  T
Q  214 aaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatga 295  Q
    | ||||| ||||||  ||| ||||| |||||||||  |||||||||||||||||  || || |||||||| || ||||||||    
T  19647833 agagtaacgcttgtggtggcgatgtaaagcggtgtttccgttgtggcagaaaagaacacacaattgcagattgcaagcatga 19647752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 19817809 - 19817683
Alignment:
Q  169 ctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagg 268  Q
    |||||||| | ||||| ||||  ||||| |||||||| ||| | || ||||| | ||||  ||| ||||| |||||||||  ||||||||||||||||||    
T  19817809 ctcctactaaagttgtttgtttccgatgtggagagaaaggtgataagagtaacgtttgtgttggcgatgtaaagcggtgtttccgttgtggcagaaaagg 19817710  T
Q  269 gcatacgattgcagagtgtaagcatga 295  Q
     ||||| |||||||| || ||||||||    
T  19817709 acatacaattgcagattgcaagcatga 19817683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 23029047 - 23029108
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| ||||||||||||||||||||||| ||||| || || ||| || |||||||||||    
T  23029047 ttgtgtgcttcaattgcaatgaagagggtcacattggttctcagtgcaagcaacctaagaag 23029108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 22463067 - 22463113
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    ||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  22463067 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgc 22463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 343
Target Start/End: Original strand, 22742552 - 22742594
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgca 343  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||    
T  22742552 ttgtgtgcttcaattgcaatgaagagggtcacattggttcgca 22742594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Original strand, 22733368 - 22733421
Alignment:
Q  309 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||| |||||||||||||| ||||| || || ||| ||||||||||||||    
T  22733368 ttcaattgtaatgaagagggtcacattggttcacagtgcaagaaacctaagaag 22733421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 216 - 376
Target Start/End: Original strand, 21631542 - 21631702
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||||||| |||||||| || |||  || |||||| |  ||| ||||||| ||| |||| ||||||||||| ||||| ||||||||||| |    
T  21631542 agtaatgcttgtactggggatgtgaaacgatgtttccattgtggtaagaaatggcatactattacagaatgtaagcatgatgatgtggtgtgtttcaact 21631641  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||||||||| ||||||||||| ||||| ||| |||| ||||||||| ||||| |||||||    
T  21631642 gcaatgaagaaggtcatattggttcgcagtgcaagaagcctaagaaggctcagactagtgg 21631702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 23474437 - 23474308
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||   |||||||| |  || ||||||||  |||| || |||||||||||  ||||||||||||||||||    
T  23474437 agtaatgcttgtcctgg-gatgtgaaacggtgttttcgttgtggtaagaaggggcatactcttgctgaatgtaagcatgattatgttgtgtgtttcaatt 23474339  T
Q  316 gcaatgaagagggtcatattgggtcgcaatg 346  Q
    |||||||||| ||| ||||||| ||||||||    
T  23474338 gcaatgaagaaggttatattggttcgcaatg 23474308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 21410424 - 21410298
Alignment:
Q  169 ctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagg 268  Q
    |||||||||| ||||| ||||  ||||| |||||||| ||||| || ||||| ||||||  ||| ||||| ||||||| |  ||||||||||||||||||    
T  21410424 ctcctactgaagttgtgtgtttccgatgtggagagaaaggtcataagagtaacgcttgtggtggcgatgtaaagcggtatttccgttgtggcagaaaagg 21410325  T
Q  269 gcatacgattgcagagtgtaagcatga 295  Q
     ||||| |||||||| || ||||||||    
T  21410324 acatacaattgcagattgcaagcatga 21410298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 21332190 - 21332275
Alignment:
Q  277 ttgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||||  | ||||| ||||| ||||||||| |||| |||||||||    
T  21332190 ttgctgagtgtaaacatgatgatgttgtgtgtttcaattgcaatgagaaaggtcacattggttcgcaatgcaagaagcctaagaag 21332275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 362
Target Start/End: Original strand, 26735922 - 26736016
Alignment:
Q  268 ggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||  |||| |||||||| ||||| |||| ||||||||||||||||||||| || ||||| ||||| | ||||| | |||| |||||||||    
T  26735922 ggcatacacttgctgagtgtaaacatgatgatgctgtgtgtttcaattgcaatgaggaaggtcacattggtttgcaatccaagaagcctaagaag 26736016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 23526209 - 23526148
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| ||||||||||||||||||||||||||||| || || ||| || | |||||||||    
T  23526209 ttgtgtgcttcaattgcaatgaagagggtcatattggttctcagtgcaagcagcctaagaag 23526148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 25429571 - 25429518
Alignment:
Q  309 ttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||| |||||||||||||| ||||| || |||||| |||| |||||||||    
T  25429571 ttcaattgtaatgaagagggtcacattggttcacaatgcaagaagcctaagaag 25429518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 14883934 - 14884026
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||||| ||||| ||   ||| ||||| | |||| |||||   |||||||  |||||||||||||||||||    
T  14883934 gcagaatctatgaagaagacaccaaagctcattataagattatgagtgagaggaggggtaagggacaacagaatcgtcctaagccttacagtg 14884026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 378
Target Start/End: Complemental strand, 6453 - 6291
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    ||||||||||||  | | |||||||| ||||||   |||||||| |  || ||||||||  ||||  | ||||||||||| |||||||| ||||| || |    
T  6453 agtaatgcttgtcttagggatgtgaaacggtgttttcgttgtggtaagaaggggcatactcttgctaaatgtaagcatgatgatgttgtatgttttaact 6354  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  6353 gcaatgaagaaggtcatattgggtcgcaatgcaagaaacctaagaagactcagactagtggaa 6291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 342
Target Start/End: Complemental strand, 26818 - 26566
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||| ||||||||||||| | | |||| ||||| | |||| | ||||| |||||||| ||| ||||  | ||||||  || || |||||||||| || |    
T  26818 cgtccaaagccttacagtgctcctgctggtaagggtaagcaaagagtgaatgatgagaggaggcctagaaagaaagatactactgctgaggttgtttgct 26719  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   || || ||||| || ||||| ||||||||||||||||| |||||||| || |||  ||||||||| |  |||||| |||| ||| || | |||||    
T  26718 atacttgtggtgagaaaggccacaagagtaatgcttgtactggagatgtgaaacgatgtttccgttgtggtaagaaagggtatactattacaaaatgtaa 26619  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgc 342  Q
    |||||| || ||||||||||| |||||||||||||| ||||||||||| ||||    
T  26618 gcatgatgaagttgtgtgttttaattgcaatgaagaaggtcatattggctcgc 26566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 36869 - 36930
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| ||||||||||||||||||||||| ||||| ||  | ||| || |||||||||||    
T  36869 ttgtgtgcttcaattgcaatgaagagggtcacattggttcttagtgcaagcaacctaagaag 36930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 285 - 376
Target Start/End: Original strand, 13512 - 13603
Alignment:
Q  285 tgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    |||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  13512 tgtatgcatgatgatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcagactagtgg 13603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 9886 - 9926
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagct 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9886 gcagaatctatgaagaggataccaaagcacattacaaagct 9926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 216384 - 216530
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| || | |||||||| ||||||   |||||||| |  || ||||||||| || | || ||||||||||| |||||||||||||| || |    
T  216384 agtaatgcttgtcctagggatgtgaaacggtgttttcgttgtggtaagaaggggcatacgcttactgaatgtaagcatgatgatgttgtgtgttttaact 216483  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||| ||||||||||||||||||||| |||| |||||||||    
T  216484 gcaatgaagaaggtcatattgggtcgcaatgcaagaagcctaagaag 216530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 22523887 - 22523741
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||  ||||||||| |  ||||||||| |  |||| |||||||||||||| ||| ||||||| |||||||    
T  22523887 agtaatgcttgtcctggagatgtgaaacggtgtttccgttgtggtaagaaagggcatgcacttgctgagtgtaagcatgatgatattgtgtgcttcaatt 22523788  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||| ||||| ||||||||| |||| |||||||||    
T  22523787 gcaatgaggaaggtcacattggttcgcaatgcaagaagcctaagaag 22523741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 362
Target Start/End: Original strand, 22421282 - 22421443
Alignment:
Q  201 gagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatg 300  Q
    ||||| || |||||||||||||||||| |||| |||||||| |||||    ||||||||||  || || |||||  |||| |||||||| ||||| |||     
T  22421282 gagaaaggccacaaaagtaatgcttgtcctggggatgtgaaacggtgctttcgttgtggcaagaagggacatacacttgctgagtgtaaacatgatgata 22421381  T
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||||||||| || || |||||||||||||||||| |||| |||||||||    
T  22421382 ttgtgtgctttaattgcaatgaggaaggacatattgggtcgcaatgcaagaagcctaagaag 22421443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 22245500 - 22245579
Alignment:
Q  297 gatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||  |||||||    
T  22245500 gatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcaaactagtgg 22245579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 22245918 - 22245997
Alignment:
Q  297 gatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtgg 376  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||  |||||||    
T  22245918 gatgtggtgtgtttcaattgcaatgaagaaggtcatattgggtcacaatgcaagaaacctaagaagactcaaactagtgg 22245997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 3274509 - 3274381
Alignment:
Q  250 cccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcga 349  Q
    ||||||||||||||||||||||||  |||||||| || |||||||||||||| ||||||||||| || |||||||| ||||| || || || || ||  |    
T  3274509 cccgttgtggcagaaaagggcatataattgcagattgcaagcatgaagatgtggtgtgtttcaactgtaatgaagaaggtcacataggttctcagtgtaa 3274410  T
Q  350 gaaacctaagaagactcaggctagtggaa 378  Q
    |||||||| |||  ||||| |||||||||    
T  3274409 gaaacctaggaaagctcagtctagtggaa 3274381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 362
Target Start/End: Complemental strand, 22990548 - 22990276
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||| ||||||||||||| | | ||||||||||   |  ||| | ||| |||||||| | | |||| || |||||| ||||||  |||| ||||||| |    
T  22990548 cgtccaaagccttacagtgctcctgctgataagggcaaatagagaatgattgatgagaggcggcctaggaagaaagacgctcctgttgagattgtctgct 22990449  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   || || ||||| || |||||  ||||||||||| |||| ||||||||  ||||    |||||||| |  |||||| ||||  |||| ||||||||    
T  22990448 atacttgtggtgagaacggccacaagggtaatgcttgtcctggagatgtgaaaaggtgctttcgttgtggtaagaaagggaatacacttgctgagtgtaa 22990349  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| |||||| | ||||||||||||||||| || |  ||||||||||| |||||| |||| |||||||||    
T  22990348 gcatgatgatgttatctgtttcaattgcaatgaggaagaacatattgggtcacaatgcaagaagcctaagaag 22990276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 21164027 - 21164088
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| ||||||||||||||||||||||| ||||| || |||||| || |||||||||||    
T  21164027 ttgtgtgcttcaattgcaatgaagagggtcacattggttctcaatgcaagcaacctaagaag 21164088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 3274608 - 3274510
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||| ||||||||||||| | | || ||||||| ||||||||  |||| |||||||| | |||| ||||||||||||  ||||||||| ||||| ||||    
T  3274608 cgtccaaagccttacagtgctcctgc-gataagggtgagcagagggtgaatgatgagaggggacccaagaggaaagagaatcctactgaagttgtttgtt 3274510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 22710627 - 22710774
Alignment:
Q  169 ctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagg 268  Q
    ||||||| || ||||| ||||  ||||| ||||| |||||||| ||  |||| ||||||| |||||||||||| ||||||  || ||||||||| || ||    
T  22710627 ctcctaccgaagttgtttgtttccgatgtggagaaaagggtcataagtgtaacgcttgtaatggtgatgtgaaacggtgtttccattgtggcaggaaggg 22710726  T
Q  269 gcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattg 316  Q
     |||||  |||  || || |||||||| ||||| || ||||| |||||    
T  22710727 acatacagttgtggattgcaagcatgatgatgtggtttgttttaattg 22710774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 21929003 - 21928969
Alignment:
Q  18 agaatctatgaagaggataccaaagcacattacaa 52  Q
    |||||||||||||||||||||||||| ||||||||    
T  21929003 agaatctatgaagaggataccaaagctcattacaa 21928969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 15536674 - 15536629
Alignment:
Q  302 tgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||    
T  15536674 tgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgc 15536629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 30310633 - 30310678
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatg 346  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||    
T  30310633 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatg 30310678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0342 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 14229 - 14376
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggca-gaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaat 314  Q
    |||||||||||| |||| |||||||| ||||||   |||||||| | |||  ||||||||  |||| || ||||||||||| |||||||| |||||||||    
T  14229 agtaatgcttgtcctggggatgtgaaacggtgttttcgttgtggtaagaagggggcatactcttgctgaatgtaagcatgatgatgttgtatgtttcaat 14328  T
Q  315 tgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||||||| ||||||||||| ||||||||  |||| |||||||||    
T  14329 tgcaatgaagaaggtcatattggttcgcaatgtaagaagcctaagaag 14376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 7165 - 7067
Alignment:
Q  264 aaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||  |||| |||||||||    
T  7165 aaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaattgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaag 7067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 14295 - 14197
Alignment:
Q  264 aaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||  |||| |||||||||    
T  14295 aaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaattgcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaag 14197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 295
Target Start/End: Complemental strand, 2470 - 2260
Alignment:
Q  85 agagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgt 184  Q
    |||| ||||||||||||||||||| | | |||||||||| | ||||||  |||| |||||||| |||||| |||| ||||||    ||| ||||| || |    
T  2470 agagtcgtcctaagccttacagtgctccggctgataagggtaagcagagggtgaatgatgagaggagacccaagaagaaagatatacctgctgagattct 2371  T
Q  185 ctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagag 284  Q
     ||||  | ||| |||||||| |||||||| ||||| ||||||||| |||||||||| ||||||  ||||||||| || || || ||||| ||||||||     
T  2370 ttgtttcctatgtggagagaaaggtcacaagagtaacgcttgtactagtgatgtgaaacggtgtttccgttgtggtaggaagggacatacaattgcagat 2271  T
Q  285 tgtaagcatga 295  Q
    || ||||||||    
T  2270 tgcaagcatga 2260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 362
Target Start/End: Original strand, 57452 - 57724
Alignment:
Q  90 cgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgtt 189  Q
    ||||| ||||||||||||| | | |||||||||| | |||| | | ||| |||||||| ||| ||||  | |||||| ||||||  |||| |||| |  |    
T  57452 cgtccaaagccttacagtgctcctgctgataagggtaagcaaagaatgaatgatgagaggaggcctagaaagaaagatgctcctgttgagattgtttact 57551  T
Q  190 atcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaa 289  Q
    ||   || || ||||| || || || |||||||||||| || | |||||||| |||||    |||||||| |  ||||||||||   |||| ||||||||    
T  57552 atacttgtggcgagaaaggccataagagtaatgcttgtccttgggatgtgaaacggtgctttcgttgtggtaagaaagggcatagacttgctgagtgtaa 57651  T
Q  290 gcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| || ||||||||||||||||| |||||||| ||||||||||| ||||||||  |||| |||||||||    
T  57652 gcatgatgacgttgtgtgtttcaattgtaatgaagaaggtcatattggttcgcaatgtaagaagcctaagaag 57724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 378
Target Start/End: Complemental strand, 15750 - 15588
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||   |||||||| |  || ||||||||  |||| || ||||||||||| |||||||| ||||| || |    
T  15750 agtaatgcttgtcctggggatgtgaaacggtgttttcgttgtggtaagaaggggcatactcttgctgaatgtaagcatgacgatgttgtatgttttaact 15651  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcaggctagtggaa 378  Q
    |||||||||| ||||||||||| ||| ||||  |||| ||||||||| ||||| ||| |||||    
T  15650 gcaatgaagaaggtcatattggttcgtaatgtaagaagcctaagaaggctcagactactggaa 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 24693 - 24567
Alignment:
Q  169 ctcctactgaggttgtctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagg 268  Q
    |||||||||| ||||| | ||  |||||||||||||| |||||||| ||||| ||||||  ||| ||||| |||||||||  ||||||||||||||||||    
T  24693 ctcctactgaagttgtttctttccgatgcggagagaaaggtcacaagagtaacgcttgtggtggcgatgtaaagcggtgtttccgttgtggcagaaaagg 24594  T
Q  269 gcatacgattgcagagtgtaagcatga 295  Q
     ||||| |||||||| || ||||||||    
T  24593 acatacaattgcagattgcaagcatga 24567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 17117 - 17154
Alignment:
Q  303 gtgtgtttcaattgcaatgaagagggtcatattgggtc 340  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  17117 gtgtgtttcaactgcaaagaagagggtcatattgggtc 17154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 23497 - 23643
Alignment:
Q  216 agtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaatt 315  Q
    |||||||||||| |||| |||||||| ||||||   |||||||| |  |||||||||||  |||| || ||||||||||| |||||||| ||||| || |    
T  23497 agtaatgcttgtcctggggatgtgaaacggtgttttcgttgtggtaagaaagggcatacacttgccgaatgtaagcatgatgatgttgtatgttttaact 23596  T
Q  316 gcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||||| || ||||||||||| ||||||||  |||| |||||||||    
T  23597 gcaatgaggaaggtcatattggttcgcaatgtaagaagcctaagaag 23643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 40970 - 41151
Alignment:
Q  114 gctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcgatgcggagagaagggtcaca 213  Q
    |||||||||| | ||||||  |||| |||||| | ||||||||  | ||||||  |||||||||| ||||| ||||| ||||| |||||| | |||||||    
T  40970 gctgataagggtaagcagagggtgaatgatgaaaggagacctataaagaaagatactcctactgaagttgtttgttaccgatggggagaggaaggtcaca 41069  T
Q  214 aaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatga 295  Q
    | ||||| |||||||  || ||||| |||||||||  ||||||||||| |||||| ||||| ||| |||| || ||||||||    
T  41070 agagtaacgcttgtaggggcgatgtaaagcggtgtttccgttgtggcataaaaggacatacaatttcagattgcaagcatga 41151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 362
Target Start/End: Original strand, 1696 - 1974
Alignment:
Q  84 cagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttg 183  Q
    ||||| ||||| ||||||||||||| | | ||||||||||   | || | ||| | |||||||| ||| ||||  | |||||| ||||||| |||| |||    
T  1696 cagagtcgtccaaagccttacagtgctcctgctgataagggaaaacaaagagttaatgatgagaggaggcctagaaagaaagatgctcctaatgagattg 1795  T
Q  184 tctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcaga 283  Q
    | || |||   || || ||||| || || || |||||||||||| |||| ||||||||  | |||   |||||||| |  ||||| |||||  |||| ||    
T  1796 tgtgctatgcttgtggcgagaaaggccataagagtaatgcttgtcctggggatgtgaaaagatgtcttcgttgtggtaagaaaggtcatacacttgctga 1895  T
Q  284 gtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| ||||| |||||||||||||| || |||||||| || ||||||||||| ||||||||| |||| | |||||||    
T  1896 gtgtaaacatgacgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcgcaatgcaagaagcgtaagaag 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 362
Target Start/End: Original strand, 4560 - 4838
Alignment:
Q  84 cagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttg 183  Q
    ||||| ||||| ||||||||||||| | | ||||||||||   | || | ||| | |||||||| ||| ||||  | |||||| ||||||| |||| |||    
T  4560 cagagtcgtccaaagccttacagtgctcctgctgataagggaaaacaaagagttaatgatgagaggaggcctagaaagaaagatgctcctaatgagattg 4659  T
Q  184 tctgttatcgatgcggagagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcaga 283  Q
    | || |||   || || ||||| || || || |||||||||||| |||| ||||||||  | |||   |||||||| |  ||||| |||||  |||| ||    
T  4660 tgtgctatgcttgtggcgagaaaggccataagagtaatgcttgtcctggggatgtgaaaagatgtcttcgttgtggtaagaaaggtcatacacttgctga 4759  T
Q  284 gtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||| ||||| |||||||||||||| || |||||||| || ||||||||||| ||||||||| |||| | |||||||    
T  4760 gtgtaaacatgacgatgttgtgtgttttaactgcaatgaggaaggtcatattggttcgcaatgcaagaagcgtaagaag 4838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 104519 - 104421
Alignment:
Q  264 aaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||||  |||| |||||||| ||||| ||| ||| |||||||||||||||||| || ||||| |||| |||||||||| |||| |||||||||    
T  104519 aaagggcatacacttgctgagtgtaaacatgatgatattgcgtgtttcaattgcaatgaggaaggtcacattgagtcgcaatgcaagaagcctaagaag 104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 368
Target Start/End: Complemental strand, 11383 - 11216
Alignment:
Q  201 gagaagggtcacaaaagtaatgcttgtactggtgatgtgaagcggtgtacccgttgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatg 300  Q
    ||||| || ||||| |||||||| |||||||| |||||||| |||||   ||||||||| |   |||  |||||  || || | ||||||||||| || |    
T  11383 gagaaaggccacaacagtaatgcctgtactggagatgtgaaacggtgcttccgttgtggtaaggaagaacatactcttacataatgtaagcatgatgacg 11284  T
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaagactcag 368  Q
    | |||||||  |||||||||||||| ||||||||  | ||||||||| |||||||||||||| |||||    
T  11283 tggtgtgttctaattgcaatgaagaaggtcatatcagttcgcaatgcaagaaacctaagaaggctcag 11216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 362
Target Start/End: Complemental strand, 36132 - 36025
Alignment:
Q  255 tgtggcagaaaagggcatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaac 354  Q
    ||||| || |||||||||| ||| || || ||||||||||||||  ||||||||| ||| |||||||||||||| || ||||| ||||| ||| || | |    
T  36132 tgtggaaggaaagggcataagatagcggaatgtaagcatgaagacattgtgtgttacaactgcaatgaagagggacacattggttcgcagtgcaaggagc 36033  T
Q  355 ctaagaag 362  Q
    ||||||||    
T  36032 ctaagaag 36025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0451 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 14081 - 14140
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | |||||||    
T  14081 ttgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 14140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 11405 - 11464
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | |||||||    
T  11405 ttgtgtgattcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 11464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 15090 - 15149
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| || | |||||||    
T  15090 ttgtgtgattcaattgcaatgaagagggtcatattggttcccaatgcaagcagcctaaga 15149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 17415 - 17356
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||| |  |||||||||    
T  17415 ttgtgtgcttcaattgcaatgaagagggtcatattggttcccaatgcaaacaacctaaga 17356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 5253 - 5207
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||    
T  5253 ttgtgtggttcaattgcaatgaagagggtcatattggttcccaatgc 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 2214 - 2089
Alignment:
Q  94 ctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttgtctgttatcg 193  Q
    ||||||||||||||| ||| |||||||||| ||||||||  |||| |||||||| ||  || |  | ||| ||  |||||||||| ||||| ||||| ||    
T  2214 ctaagccttacagtgcttcggctgataagggtgagcagagggtgaatgatgagaggaagcccataaagaaggatactcctactgaagttgtttgttaccg 2115  T
Q  194 atgcggagagaagggtcacaaaagta 219  Q
    ||| ||||| || |||||||| ||||    
T  2114 atgtggagaaaaaggtcacaagagta 2089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 41911 - 41826
Alignment:
Q  277 ttgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||| |||||||| ||||| ||| ||||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| |||||||||    
T  41911 ttgctgagtgtaaacatgatgatattgtgtgctttaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaag 41826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 75631 - 75546
Alignment:
Q  277 ttgcagagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||| |||||||| ||||| ||| ||||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| |||||||||    
T  75631 ttgctgagtgtaaacatgatgatattgtgtgctttaattgcaatgaggaaggtcacattggttcgcagtgcaagaagcctaagaag 75546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 14358 - 14278
Alignment:
Q  282 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    |||||||||||||  ||| | || ||||| |||||||||||||||||||| ||||| || || ||| |||| |||||||||    
T  14358 gagtgtaagcatgttgatatagtatgttttaattgcaatgaagagggtcacattggttcacagtgcaagaagcctaagaag 14278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 54911 - 54831
Alignment:
Q  282 gagtgtaagcatgaagatgttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||| || ||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| | ||  |||| |||||||||    
T  54911 gagtgcaaacatgatgatattgtgtgttttaattgcaatgaagagggtcacattggttcgtagtgtaagaagcctaagaag 54831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 105 - 46
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaaga 360  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||| || | |||||||    
T  105 ttgtgtgcttcaattgtaatgaagagggtcatattggttcccaatgcaagcagcctaaga 46  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1517 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1517
Description:

Target: scaffold1517; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 1319 - 1425
Alignment:
Q  84 cagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaggttg 183  Q
    ||||| ||||||||||||||||||| | | ||||| ||||   | |||||| ||| |||||| | ||| || ||||||| ||| |||||| ||||| |||    
T  1319 cagagtcgtcctaagccttacagtgctcctgctgacaagggaaaacagaaaatgaatgatgataggaggcccaagaggagagatgctcctgctgagattg 1418  T
Q  184 tctgtta 190  Q
    |||||||    
T  1419 tctgtta 1425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 179
Target Start/End: Complemental strand, 17112 - 17014
Alignment:
Q  81 caacagagccgtcctaagccttacagtgattccgctgataaggatgagcagaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgag 179  Q
    |||||||| ||||| ||||| || |||| | | || || |||| | |||||||| ||| |||||||| ||| |||||||||| ||| ||||||||||||    
T  17112 caacagagtcgtccgaagccgtatagtgctcctgccgacaagggtaagcagaaactgaatgatgagaggaggcctaagaggagagatgctcctactgag 17014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 229901 - 229947
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatgc 347  Q
    ||||||| ||||||||||| ||||||||||||||||| || ||||||    
T  229901 ttgtgtgcttcaattgcaacgaagagggtcatattggttcccaatgc 229947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 3659 - 3712
Alignment:
Q  19 gaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagagga 72  Q
    |||||||||| |||||||||||||||||||| || | ||| ||||| |||||||    
T  3659 gaatctatgaggaggataccaaagcacattataaggttatgagtgagaagagga 3712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 50394 - 50439
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgggtcgcaatg 346  Q
    ||||||| |||||||| |||||||||||||||||||| || |||||    
T  50394 ttgtgtgcttcaattgtaatgaagagggtcatattggttcacaatg 50439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 7706 - 7742
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  7706 ttgtgtgcttcaattgcaatgaagagggtcacattgg 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 43 - 7
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  43 ttgtgtgcttcaattgcaatgaggagggtcatattgg 7  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 23687 - 23779
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||| | ||||| ||   ||| ||||| | |||| |||||   |||||||| |||||||||||||||||||    
T  23687 gcagaatctatgaagaagacaccaaaactcattataagattatgagtgagaggaggggtaagggacaacagagtcgtcctaagccttacagtg 23779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 40561 - 40617
Alignment:
Q  306 tgtttcaattgcaatgaagagggtcatattgggtcgcaatgcgagaaacctaagaag 362  Q
    ||||| |||||||||||||||||||| ||||| || || ||| |||| |||||||||    
T  40561 tgttttaattgcaatgaagagggtcacattggttcacagtgcaagaagcctaagaag 40617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 21859 - 21823
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  21859 ttgtgtgcttcaattgcaatgaagagggtcacattgg 21823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 37283 - 37247
Alignment:
Q  301 ttgtgtgtttcaattgcaatgaagagggtcatattgg 337  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  37283 ttgtgtgcttcaattgcaatgaagagggtcacattgg 37247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 42275 - 42183
Alignment:
Q  16 gcagaatctatgaagaggataccaaagcacattacaaagctataagtgaaaagaggagtaagaatcaacagagccgtcctaagccttacagtg 108  Q
    |||||||||||||||| || |||||||| ||||| ||   ||| ||||| | |||| |||||   |||||||  |||||||||||||||||||    
T  42275 gcagaatctatgaagaagacaccaaagctcattataagattatgagtgagaggaggggtaagggacaacagaatcgtcctaagccttacagtg 42183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University