View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12320_low_9 (Length: 263)
Name: NF12320_low_9
Description: NF12320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12320_low_9 |
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| [»] scaffold2176 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 48940838 - 48940605
Alignment:
| Q |
19 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48940838 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
48940739 |
T |
|
| Q |
119 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48940738 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
48940639 |
T |
|
| Q |
219 |
caaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
48940638 |
caaatacagctcttttcatcatgtcttcacaggt |
48940605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 6946864 - 6947097
Alignment:
| Q |
19 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6946864 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaatagctgcatgcattgcacggtggatatgaaga |
6946963 |
T |
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| Q |
119 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
218 |
Q |
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| T |
6946964 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
6947063 |
T |
|
| Q |
219 |
caaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
6947064 |
caaatacagctcttttcatcatgtcttcacaggt |
6947097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 19677291 - 19677524
Alignment:
| Q |
19 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19677291 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
19677390 |
T |
|
| Q |
119 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19677391 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
19677490 |
T |
|
| Q |
219 |
caaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
19677491 |
caaatacagctcttttcatcatgtcttcacaggt |
19677524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 18300263 - 18300030
Alignment:
| Q |
19 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18300263 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
18300164 |
T |
|
| Q |
119 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18300163 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
18300064 |
T |
|
| Q |
219 |
caaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
18300063 |
caaatacagctcttttcatcatgtcttcacaggt |
18300030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2176 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold2176
Description:
Target: scaffold2176; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 686 - 919
Alignment:
| Q |
19 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || || |||||| |
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| T |
686 |
tccacctgacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcgataactgcatgcattgcgcgatgtatgtgaaga |
785 |
T |
|
| Q |
119 |
agtagaccattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctag |
218 |
Q |
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||||||||||| ||||||||||| ||||||||| |||||||||| ||||| || || ||||||||||||||||| |||||||| || ||||||||||| | |
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| T |
786 |
agtagaccattgtcgcggcaataatgagccaagctagtatttgcggtgaaccccccagttaagtagtcatgcatgacgataggaactcccaattctctgg |
885 |
T |
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| Q |
219 |
caaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
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||||||| |||||||| ||||| ||||||||||| |
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| T |
886 |
caaataccgctcttttgatcatttcttcacaggt |
919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 255560 - 255337
Alignment:
| Q |
26 |
gacatacgtaacgctttagctaatacacgaaagtgcataccatgatttttctgtctatcaataactgcatgcattgcacggtggatatgaagaagtagac |
125 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
255560 |
gacatacgcaatgctttagctaatacacggaaatgcataccatgatttttctgtctatcaataactgcatgcattgcacggtgaatgtgaagaagtaagc |
255461 |
T |
|
| Q |
126 |
cattatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctagcaaatac |
225 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| || || |||||||| |||||||| |
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| T |
255460 |
cattgtcgcggcaatagtgagccaaagtagtatttgcggtgaatcccccggttaagtagtcatgcattacaataggaacccctaattctctcgcaaatac |
255361 |
T |
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| Q |
226 |
agctcttttcatcatgtcttcaca |
249 |
Q |
| |
|
|||||| || ||||| |||||||| |
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|
| T |
255360 |
agctctcttaatcatttcttcaca |
255337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 138039 - 137965
Alignment:
| Q |
178 |
taagtagtcatgcattacgataggcacgcccaattctctagcaaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
138039 |
taagtagtcatgcattacgataggcacgcccaattctctagcaaatacagctcttttcatcatgtcttcacaggt |
137965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 26053396 - 26053494
Alignment:
| Q |
129 |
tatcgcggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctagcaaatacag |
227 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26053396 |
tatcgtggcaatagtgagccaaggtagtatttgcagtgaatccaccggttaagtagtcatgcattacgataggcacgcccaattctctagcaaatacag |
26053494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 13168949 - 13169023
Alignment:
| Q |
178 |
taagtagtcatgcattacgataggcacgcccaattctctagcaaatacagctcttttcatcatgtcttcacaggt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13168949 |
taagtagtcatgcattacgataggcacgcccaattctctagcaaatacagctcttttcatcatgtcttcacaggt |
13169023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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