View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12321_low_1 (Length: 1103)

Name: NF12321_low_1
Description: NF12321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12321_low_1
NF12321_low_1
[»] chr2 (5 HSPs)
chr2 (14-851)||(38832750-38833583)
chr2 (920-1084)||(38832537-38832704)
chr2 (675-731)||(35401130-35401188)
chr2 (693-791)||(35401018-35401116)
chr2 (39-101)||(42859905-42859967)
[»] chr4 (3 HSPs)
chr4 (676-818)||(35434534-35434676)
chr4 (757-830)||(27758227-27758300)
chr4 (299-389)||(171314-171404)
[»] chr7 (3 HSPs)
chr7 (675-818)||(48473869-48474010)
chr7 (43-91)||(28820814-28820862)
chr7 (49-92)||(18725471-18725514)
[»] chr3 (2 HSPs)
chr3 (39-101)||(32349565-32349627)
chr3 (43-101)||(38970197-38970255)
[»] chr8 (2 HSPs)
chr8 (706-772)||(43752766-43752831)
chr8 (39-92)||(8705686-8705739)
[»] chr1 (2 HSPs)
chr1 (31-93)||(47572995-47573057)
chr1 (46-92)||(46159909-46159955)
[»] chr6 (1 HSPs)
chr6 (675-731)||(3048981-3049037)
[»] scaffold0189 (1 HSPs)
scaffold0189 (675-722)||(10713-10760)
[»] chr5 (1 HSPs)
chr5 (39-92)||(35037690-35037743)


Alignment Details
Target: chr2 (Bit Score: 697; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 14 - 851
Target Start/End: Complemental strand, 38833583 - 38832750
Alignment:
Q  14 cctgtggatgtcgggggaacaaagaatcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttgaagttctaagaattgatatca 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833583 cctgtggatgtcgggggaacaaacaatcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttgaagttctaagaattgatatca 38833484  T
Q  114 gtctattagatgatgaataaccatggtgcaaaattcaaggtgacaaggttcgatgggacgagtaannnnnnnattatggcaaaggaggcgggttaaagat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||   ||||||||||||    
T  38833483 gtctattagatgatgaataaccatggtgcaaaattcaaggtgacaaggttcgatgggacgagtaatttttt-attatggcaaagg---cgggttaaagat 38833388  T
Q  214 atgttggatcgacaaaatttataaaaggcactacataagatgaaactgatagacacaaatgacaactatttggttgagatgtaggagaaggccacaagat 313  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38833387 atgttgaatcgacaaagtttataaaaggcactacataagatgaaactgatagacacaaatgacaactatttggttgagatgtaggagaaggccgcaagat 38833288  T
Q  314 tgatacatcaatgtgtttcaaacgagatgatgtatcatatcctggacttaacgactccgaaggaggtttgagataacttagagaattcagatttgtcggt 413  Q
    ||||||||| || | |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833287 tgatacatctatctatttcaaacgagatgatatatcatatcctgaacttaacgactccgaaggaggtttgagataacttagagaattcagatttgtcggt 38833188  T
Q  414 gatgaacaaactcttcatgaagactcggctatacaatctgaggatgcatgaaggatctgatttgcaacaacatgtcaatgtcttcgataacataatcacc 513  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833187 gatgaacaaactcttcatgaagacccggctatacaatctgaggatgcaggaaggatctgatttgcaacaacatgtcaatgtcttcgataacataatcacc 38833088  T
Q  514 gaactggtgaagcttggggtgaagatagatgacgaagacaaggaaannnnnnngttgtgttcgttaccaggtttaaatgactacccggtgactactctta 613  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  38833087 gaactggtgaagcttggggtgaagatagatgacgaagacaagggaatttttttgttgtgttcgttaccaggtttaaatgactacccggtgactactctta 38832988  T
Q  614 cgtactataaagacgatatcaatctcaatattattactactacactatgtacttagtgataactctaattatcttatagtgaagaaaagtgcactcttcg 713  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38832987 cgtactagaaagacaatatcaatctcaatattattactactacactatgtacttagtgataactctaattatcttatagtgaagaaaagtgcactcttcg 38832888  T
Q  714 agtgagtgtcaaatcctatagagaaacgtgaagagaaattggagaagaaagtgaaacctaattcttattcaacatattcaaattggttcaatgttacatc 813  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  38832887 agtgagtgtcaaatcctatagaaaaacgtgaagagaaattggagaagaaagtgaaacctagttcttattcaacatatttaaattgattcaatgttacatc 38832788  T
Q  814 atataaagtcgatcttaattcttaacacaacaacttgc 851  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  38832787 atataaagtcgatcttgattcttgacacaacaacttgc 38832750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 920 - 1084
Target Start/End: Complemental strand, 38832704 - 38832537
Alignment:
Q  920 tacaactctacttgctcacaaaatcattcatctaacgaaattgtatatgtaatagcgagtgatggtgtattcaatatgattatacaacatcaagtatgag 1019  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||    
T  38832704 tacaactctacttgctcacaaaatcattcatctaacgaaattgtatatctagttgtgagtgatggtgtattcaatatgattatacaacatcaagtatgag 38832605  T
Q  1020 aaaaataatattatagaaaactaagta---gtagggtcaaacgcctcatctccagatagaccagataa 1084  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  38832604 aaaaataatattatagaaaactaagtagtagtagggtcaaacgcctcatctccagatagaccagataa 38832537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 675 - 731
Target Start/End: Complemental strand, 35401188 - 35401130
Alignment:
Q  675 actctaattatcttatagtgaagaaaagtgcac--tcttcgagtgagtgtcaaatccta 731  Q
    |||||| |||||||| |||||||||||| ||||  |||||||||||||||||| |||||    
T  35401188 actctacttatcttagagtgaagaaaagggcacactcttcgagtgagtgtcaactccta 35401130  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 693 - 791
Target Start/End: Complemental strand, 35401116 - 35401018
Alignment:
Q  693 tgaagaaaagtgcactcttcgagtgagtgtcaaatcctatagagaaacgtgaagagaaattggagaagaaagtgaaacctaattcttattcaacatatt 791  Q
    |||||||||  ||||||||||||||||||| |  ||||| |||||||   || ||||||||   ||||||||||||||||   | ||||||||||||||    
T  35401116 tgaagaaaatggcactcttcgagtgagtgtaatctcctagagagaaaatagatgagaaattatggaagaaagtgaaaccttgatattattcaacatatt 35401018  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 42859967 - 42859905
Alignment:
Q  39 atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttgaagttctaa 101  Q
    ||||||||| |||||||||  ||||||||||| |||||||| | ||||||||||  |||||||    
T  42859967 atcatgttctattgtttgcggtttgtgttttccttaatcttctattactagttgttgttctaa 42859905  T

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Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 676 - 818
Target Start/End: Complemental strand, 35434676 - 35434534
Alignment:
Q  676 ctctaattatcttatagtgaagaaaagtgcactcttcgagtgagtgtcaaatcctatagagaaacgtgaagagaaattggagaagaaagtgaaacctaat 775  Q
    |||||||||||||| |||||||||| | |||||||||||| ||||||||| |  || ||||||| ||||||||||||| |||||||||| ||||||| ||    
T  35434676 ctctaattatcttagagtgaagaaacgggcactcttcgagggagtgtcaacttatagagagaaaagtgaagagaaatttgagaagaaagcgaaaccttat 35434577  T
Q  776 tcttattcaacatattcaaattggttcaatgttacatcatata 818  Q
    | ||||| | ||||||  ||||||||||| |||||||||||||    
T  35434576 tattatttatcatattagaattggttcaacgttacatcatata 35434534  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 757 - 830
Target Start/End: Original strand, 27758227 - 27758300
Alignment:
Q  757 gaagaaagtgaaacctaattcttattcaacatattcaaattggttcaatgttacatcatataaagtcgatctta 830  Q
    |||||||||||||||| ||| |||||||||||||   |||||||||| | |||||||||||| |||| ||||||    
T  27758227 gaagaaagtgaaaccttattattattcaacatatctgaattggttcactattacatcatatatagtcaatctta 27758300  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 171404 - 171314
Alignment:
Q  299 agaaggccacaagattgatacatcaatgtgtttcaaacgagatgatgtatcatatcctggacttaacgactccgaaggaggtttgagataa 389  Q
    |||||| |||| ||||||||  |  |||||||||| ||||| |||||||||||||  ||||| |||| |||  ||||||||||||||||||    
T  171404 agaaggtcacatgattgatatgtttatgtgtttcagacgaggtgatgtatcatattatggacctaacaactttgaaggaggtttgagataa 171314  T

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Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 675 - 818
Target Start/End: Complemental strand, 48474010 - 48473869
Alignment:
Q  675 actctaattatcttatagtgaagaaaagtgcactcttcgagtgagtgtcaaatcctatagagaaacgtgaagagaaattggagaagaaagtgaaacctaa 774  Q
    ||||||||||||| | ||||||||||||  ||||||||||||||||||| | ||||| ||||||| | || || ||||||| |||||||||||| |||      
T  48474010 actctaattatctaagagtgaagaaaag--cactcttcgagtgagtgtcgactcctagagagaaaagagatgaaaaattggggaagaaagtgaacccttg 48473913  T
Q  775 ttcttattcaacatattcaaattggttcaatgttacatcatata 818  Q
    || ||||| |||||||   | |||||||| ||||||||||||||    
T  48473912 ttattatttaacatatcagagttggttcattgttacatcatata 48473869  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 28820814 - 28820862
Alignment:
Q  43 tgttccattgtttgcaatttgtgttttctttaatcttttgttactagtt 91  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  28820814 tgttccattgtttgtgatttgtgttttatttaatcttttgttactagtt 28820862  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 18725471 - 18725514
Alignment:
Q  49 attgtttgcaatttgtgttttctttaatcttttgttactagttg 92  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||    
T  18725471 attgtttgcgatttgtgttttctgtaatcttctgttactagttg 18725514  T

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Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 32349627 - 32349565
Alignment:
Q  39 atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttgaagttctaa 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  |||||||    
T  32349627 atcatgttccattgtttgcgatttgtgttatctttaatcttttgttactagttgctgttctaa 32349565  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 38970197 - 38970255
Alignment:
Q  43 tgttccattgtttgcaatttgtgttttctttaatcttttgttactagttgaagttctaa 101  Q
    |||||| |||||||| ||||| ||||||||| ||||| ||||||||||||| |||||||    
T  38970197 tgttccgttgtttgcgatttgcgttttctttgatcttctgttactagttgatgttctaa 38970255  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 43752831 - 43752766
Alignment:
Q  706 actcttcgagtgagtgtcaaatcctatagagaaacgtgaagagaaattggagaagaaagtgaaacct 772  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||| ||||||||    
T  43752831 actcttcgagtgagtgtcaactcctagagagaaa-gtgaagagaatttggagaagaaactgaaacct 43752766  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 8705739 - 8705686
Alignment:
Q  39 atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttg 92  Q
    ||||||||||||||||||  ||||||||||||||||||||  | ||||||||||    
T  8705739 atcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttg 8705686  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 47573057 - 47572995
Alignment:
Q  31 aacaaagaatcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttga 93  Q
    |||||| |||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  47573057 aacaaacaatcgtgttccattgtttgttatttgtgttttctttgatcttttgttactagttga 47572995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 46159909 - 46159955
Alignment:
Q  46 tccattgtttgcaatttgtgttttctttaatcttttgttactagttg 92  Q
    |||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  46159909 tccattattttcaatttgcgttttctttaatcatttgttactagttg 46159955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 675 - 731
Target Start/End: Original strand, 3048981 - 3049037
Alignment:
Q  675 actctaattatcttatagtgaagaaaagtgcactcttcgagtgagtgtcaaatccta 731  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||    
T  3048981 actctaattatcttagagtgaagaaaatggcactcttcgagtgagtgtcaactccta 3049037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 675 - 722
Target Start/End: Complemental strand, 10760 - 10713
Alignment:
Q  675 actctaattatcttatagtgaagaaaagtgcactcttcgagtgagtgt 722  Q
    ||||||||||| | | |||||||||||| |||||||||||||||||||    
T  10760 actctaattatatcagagtgaagaaaagggcactcttcgagtgagtgt 10713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 35037690 - 35037743
Alignment:
Q  39 atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttg 92  Q
    |||| |||||||||||| | |||| |||| ||||||||||| ||||||||||||    
T  35037690 atcaagttccattgtttacgatttatgttatctttaatcttctgttactagttg 35037743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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