View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12321_low_2 (Length: 488)
Name: NF12321_low_2
Description: NF12321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12321_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 55912644 - 55913126
Alignment:
| Q |
1 |
taaataagtaaatctcacattttccttcatttcagaattgacatttacaaaaagttgagattctgcagactacataataacctgctaaaaggaacatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55912644 |
taaataagtaaatctcacattttccttcatttcagaattgacatttacaaaaagttgagattctgcagactacataataacctgctaaaaggaacatgtt |
55912743 |
T |
|
| Q |
101 |
ggaaatagagctaaatctcaaagtttatatatggaaaaactttggataccatacattatgctaatactaaggtactagtaaaacaggtaacgaaaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55912744 |
ggaaatagagctaaatctcaaagtttatatatggaaaaactttggataccatacattatgctaatactaaggtactagtaaaacaggtaacgaaaaataa |
55912843 |
T |
|
| Q |
201 |
aggtcagttacacctaacacatccaagcagaagaagtggccatagctcttttcatccaaccaagatagagagcaccatctctatgttcaagccaataatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55912844 |
aggtcagttacacctaacacatccaagcagaagaagtggccatagctcttttcatccaaccaagatagagagcaccatctctatgttcaagccaataatt |
55912943 |
T |
|
| Q |
301 |
ttgatggaagtccttcaacatattttggacagaatgcatcactgaagaactcaattggcattgtctaaatcctgccatggaaaatctcgacctccacttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55912944 |
ttgatggaagtccttcaacatattttggacagaatgcatcactgaagaactcaattggcattgtctaaatcctgccatggaaaatctcgacctccacttc |
55913043 |
T |
|
| Q |
401 |
ccaaaaacttcatgcctctccaccctctcaatcccctcacaggctatcatgttgacaatgtcccgtgccgcacaggttctgctc |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
55913044 |
ccaaaaacttcatgcctctccaccctctcaatcccctcacaggctatcatgttgacaatgtcccgtgccacaca-gttctgctc |
55913126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University