View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12321_low_4 (Length: 350)
Name: NF12321_low_4
Description: NF12321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12321_low_4 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0001 (2 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 1925031 - 1925360
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
1925031 |
agaacctgagcattatgccaacgattccgtaataaaataggaactagagacggtgtcgaaaaaattagaatagcactagtggagtcactctccagccaaa |
1925130 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1925131 |
tatgtctccatcctttttgagctgcatactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
1925230 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1925231 |
accgcgaaaggttccgagactatcacgaaacagccctccacaggccgcatgcccaccaaaaacagaaccatccgtattgacctttagccaaggcgaggaa |
1925330 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |
|
|
| T |
1925331 |
ggagctttccataataccataataatgtcc |
1925360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 10691542 - 10691675
Alignment:
| Q |
78 |
agagcactagtggagtcactctccagcctaatatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaa |
177 |
Q |
| |
|
|||||||| |||||||| ||||| |||| ||| | ||||||||||| | || || || |||||||| | ||| || |||||||| || |||||||||| |
|
|
| T |
10691542 |
agagcactcgtggagtcgctctcaagccaaatgtttctccatccattccgggcagcgaattcaatagcaaaaataattccaaaaacctccgcataaaaaa |
10691641 |
T |
|
| Q |
178 |
cagtctgtataccaatgttacaataaaaagcacc |
211 |
Q |
| |
|
||| |||| | ||| ||||||| | |||||||| |
|
|
| T |
10691642 |
cagattgtaaatcaacgttacaagagaaagcacc |
10691675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 10905308 - 10905441
Alignment:
| Q |
78 |
agagcactagtggagtcactctccagcctaatatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaa |
177 |
Q |
| |
|
|||||||| |||||||| ||||| |||| ||| | ||||||||||| | || || || |||||||| | ||| || |||||||| || |||||||||| |
|
|
| T |
10905308 |
agagcactcgtggagtcgctctcaagccaaatgtttctccatccattccgggcagcgaattcaatagcaaaaataattccaaaaacctccgcataaaaaa |
10905407 |
T |
|
| Q |
178 |
cagtctgtataccaatgttacaataaaaagcacc |
211 |
Q |
| |
|
||| |||| | ||| ||||||| | |||||||| |
|
|
| T |
10905408 |
cagattgtaaatcaacgttacaagagaaagcacc |
10905441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 19905076 - 19905344
Alignment:
| Q |
66 |
gaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaactt |
165 |
Q |
| |
|
|||||||| | || |||||| ||||||| ||||| |||||||| | ||||| || | ||| || ||| |||||||||| | ||| || || | || | |
|
|
| T |
19905076 |
gaaaaaatcaaaatagcactgatggagtcgctctcaagcctaatgttcctccaccctttttgggcagcatactcaatagcaaaaataattcccactacct |
19905175 |
T |
|
| Q |
166 |
ctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccacc |
265 |
Q |
| |
|
| |||||||| |||| |||| ||||| ||||||||||||||||| ||||| || || ||| ||| | |||||||| |||||| | | || ||||| |
|
|
| T |
19905176 |
ccgcataaaagacagattgtaaaccaacattacaataaaaagcaccacgaaaggtgcctagataattacggaacagccccccacagactacttgtccacc |
19905275 |
T |
|
| Q |
266 |
aataacaaaaccatccgtattgacctttaaccaaggcgaggaaggagctttccataacaccataatgat |
334 |
Q |
| |
|
||| || |||||||||| || || || ||||||| ||||| ||| | |||||||| |||| |||||| |
|
|
| T |
19905276 |
aatcaccgaaccatccgtgttaactttcaaccaagtcgaggtaggggtcttccataaaaccaaaatgat |
19905344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 129130 - 128801
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
129130 |
agaacctgagcattatgccgacgattccttaataaaataggaactagagacggttgcgaaaaaattagaagagcactagtgcagtcactctccagccaaa |
129031 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
129030 |
tatgtctccatccatgttgagctgcgaactcaatagccagaatgatgccaaaaacttctacataaaaaacagtctgtataccaatgttacaataaaaagc |
128931 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
128930 |
accgcgaaatgttccgagataatcgcgaaacagccctccacaggccgcatgtccactaataaccgaaccatctgtattgacctttaaccaaggcgaggaa |
128831 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
128830 |
ggagctttccataacaccataataatgtcc |
128801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 306947 - 306618
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
306947 |
agaacctgagcattatgccgacgattccttaataaaataggaactagagacggttgcgaaaaaattagaagagcactagtgcagtcactctccagccaaa |
306848 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
306847 |
tatgtctccatccatgttgagctgcgaactcaatagccagaatgatgccaaaaacttctacataaaaaacagtctgtataccaatgttacaataaaaagc |
306748 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
306747 |
accgcgaaatgttccgagataatcgcgaaacagccctccacaggccgcatgtccactaataaccgaaccatctgtattgacctttaaccaaggcgaggaa |
306648 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
306647 |
ggagctttccataacaccataataatgtcc |
306618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 19945 - 20274
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
19945 |
agaacctgagcattatgccaacgattccgtaataaaataggaactagagacgggttcgaaaaaattagaagagcactagtgtagtcactctccagccaaa |
20044 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
|||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20045 |
tatgtcgccatcctttttgagctgcatactcaatagccagaatgatgccaaaaacttctgcatagaaaacagtctgtataccaatgttacaataaagagc |
20144 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20145 |
accgcaaaaggttccgagactatcacgaaacagccctccacaggccgcatgcccaccgataacagaaccatccgtattgatctttaaccaaggcgaggaa |
20244 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
20245 |
ggagctttccataacaccataataatgtcc |
20274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 21812864 - 21812535
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
21812864 |
agaacctgagcattatgccaacgattccgtaataaaataggaactagagacgggttcgaaaaaattagaagagcactagtgtagtcactctccagccaaa |
21812765 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
|||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21812764 |
tatgtcgccatcctttttgagctgcatactcaatagccagaatgatgccaaaaacttctgcatagaaaacagtctgtataccaatgttacaataaagagc |
21812665 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21812664 |
accgcaaaaggttccgagactatcacgaaacagccctccacaggccgcatgcccaccgataacagaaccatccgtattgatctttaaccaaggcgaggaa |
21812565 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
21812564 |
ggagctttccataacaccataataatgtcc |
21812535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 16280127 - 16280031
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcc |
105 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
16280127 |
agaaactgagcattatgccaacgattccgtaacaaaataggaactagagacggtttcgaaaatattagaagagcactagtggagtcactctcaagcc |
16280031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 8274047 - 8273904
Alignment:
| Q |
186 |
ataccaatgttacaataaaaagcaccgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtat |
285 |
Q |
| |
|
|||||||| |||||| |||| ||||| ||||||| || | | |||||||| ||||| |||||||||||||| || |||| ||| ||||||| |||| |
|
|
| T |
8274047 |
ataccaatattacaagaaaaggcaccaagaaatgtacctaatgagtcctgaaagagcccgccacaggccgcatgaccgccaagaacttaaccatcagtat |
8273948 |
T |
|
| Q |
286 |
tgacctttaaccaaggcgaggaaggagctttccataacaccata |
329 |
Q |
| |
|
| || || || ||||| ||||| || |||||||| ||||||||| |
|
|
| T |
8273947 |
tcactttcaagcaaggagaggacggggctttccacaacaccata |
8273904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 21878278 - 21878607
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| || |
|
|
| T |
21878278 |
agaacctgatcattatgccaacgattccataacaaaataggaactagagacggcttcgaaaaaattagaagagcactggtggagtcactctcaagccaaa |
21878377 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
|||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21878378 |
tatgtcgccatcctttttgagctgcatactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
21878477 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21878478 |
accgcgaaaggttcctcaactatcacgaaacagccctccacaggccgcatgcccaccaataacagaaccatccgtatttaccttcaaccaaggcgaggaa |
21878577 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |
|
|
| T |
21878578 |
ggagctttccataacaccaaaataatgtcc |
21878607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 56091 - 56408
Alignment:
| Q |
9 |
agaacctgtgcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaa |
108 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| | || || |
|
|
| T |
56091 |
agaacctgagcattatgccaacgattacgtaacaaaataggaactagtgacgacttagaaaaaattagaagagcactagtggagtcactctcaaaccaaa |
56190 |
T |
|
| Q |
109 |
tatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagc |
208 |
Q |
| |
|
||| ||||||||| | |||||||||| | ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
56191 |
tatttctccatcctttttgagctgcata------------aatgatgcctaaaacctctgcataaaaaacagtcagtataccaatgttacaataaaaagc |
56278 |
T |
|
| Q |
209 |
accgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaa |
308 |
Q |
| |
|
||||||||| || || | | ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
56279 |
accgcgaaaggtgcctaagctatcacgaaacaaccctccacaggccgcatgcccaccaataacagaaccatccgtatttaccttcagccaaggcgaggaa |
56378 |
T |
|
| Q |
309 |
ggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |
|
|
| T |
56379 |
ggagctttccataacaccaaaataatgtcc |
56408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 20632153 - 20631834
Alignment:
| Q |
18 |
gcattatgccaacgattccgtaataaaataggaactag-agacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctc |
116 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| | ||| || || ||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
20632153 |
gcattatgccaacgattacgtaacaaaataggaaccatcaga-ggcttagaaaaaattagaagagcactagtggagtcactctctagccaaatattcctc |
20632055 |
T |
|
| Q |
117 |
catccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaa |
216 |
Q |
| |
|
||||| | ||| |||||| || ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
20632054 |
catcctttttgtgctgcatac-caatagcaagaatgatgcctaaaacctctgcataaaaaacagtctgtataccaatattacaataaaaatcactgcgaa |
20631956 |
T |
|
| Q |
217 |
atgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaaggagcttt |
316 |
Q |
| |
|
| || || | || ||| ||||||||||| |||||||| |||||||||||||||||| | ||||| ||||| ||||| | ||||||||||||||| || || |
|
|
| T |
20631955 |
aggtgcctaaactatcatgaaacagccccccacaggcggcatgcccaccaataacagatccatctgtatttaccttcagccaaggcgaggaaggtgcctt |
20631856 |
T |
|
| Q |
317 |
ccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||||||| ||| |||||| |
|
|
| T |
20631855 |
ccataacaccaaaattatgtcc |
20631834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 20425935 - 20425799
Alignment:
| Q |
129 |
gctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaatgttccgagac |
228 |
Q |
| |
|
||||||||||||||||| | ||| | |||| || || ||||||||||||| || |||||||| |||||| ||||||| ||||| || || || ||| |
|
|
| T |
20425935 |
gctgcaaactcaatagcaataataaaaccaagcacctccgcataaaaaacagaatgaataccaatattacaacaaaaagctccgcggaaagtaccaagag |
20425836 |
T |
|
| Q |
229 |
aatcctgaaacagccctccacaggccgcatgcccacc |
265 |
Q |
| |
|
|||| |||||||||| ||||| || ||||||||||| |
|
|
| T |
20425835 |
aatcacgaaacagccccccacaagctgcatgcccacc |
20425799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 28697674 - 28697603
Alignment:
| Q |
235 |
gaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgagg |
306 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||| | |||||||| |||||||| |||||||| |||| |
|
|
| T |
28697674 |
gaaacagccccccacgggccgcatgtccaccaataaccgatccatccgtgttgaccttcaaccaaggagagg |
28697603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 21073 - 21341
Alignment:
| Q |
18 |
gcattatgccaacgattccgtaataaaataggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctcc |
117 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |||| ||||| || ||||||| || |||||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
21073 |
gcattatgccaacgattacgtaacaaaataggagctagtgacggcttagaaaaaagtaaaagagcactagtggagtcactctctagccaaatattcctcc |
21172 |
T |
|
| Q |
118 |
atccatgttgagctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaa |
217 |
Q |
| |
|
|||| | ||| |||||| |||||||||| || |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||| |||| |
|
|
| T |
21173 |
atcctttttgtgctgcatactcaatagcaaggatgatgccaaaaacttctgcataaaaaacagtgtgtagaccaacattaaaataaaaagcaccgagaaa |
21272 |
T |
|
| Q |
218 |
tgttccgagacaatcctgaaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtatt |
286 |
Q |
| |
|
|| || | || ||| |||||| |||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
21273 |
ggtgcctaaactatcactaaacagtcctccacatgccgcatgcccaccaataacagaaccatcggtatt |
21341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 6981 - 7026
Alignment:
| Q |
282 |
gtattgacctttaaccaaggcgaggaaggagctttccataacacca |
327 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
6981 |
gtatttaccttcaaccaaggcgaggaaggagctttccacaacacca |
7026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 66 - 338
Target Start/End: Complemental strand, 15664 - 15392
Alignment:
| Q |
66 |
gaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctccatccatgttgagctgcaaactcaatagccagaatgatgccaaaaactt |
165 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||| |||| ||||| |||||||| | ||| | |||| |||||| || ||||||||||| ||||| | |
|
|
| T |
15664 |
gaaaaaattagaatagcagaagtagagtcactctctagccaaatattcctccatcctttttgtgttgcatgctcaatggcaagaatgatgcctaaaacct |
15565 |
T |
|
| Q |
166 |
ctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaatgttccgagacaatcctgaaacagccctccacaggccgcatgcccacc |
265 |
Q |
| |
|
| ||||||||||||| |||||||||||| ||||||||||||||||||||||| || || | || ||| |||||||||| |||||||||||||||||| | |
|
|
| T |
15564 |
cagcataaaaaacagactgtataccaatattacaataaaaagcaccgcgaaaggtgcctaaactatcacgaaacagccccccacaggccgcatgcccatc |
15465 |
T |
|
| Q |
266 |
aataacaaaaccatccgtattgacctttaaccaaggcgaggaaggagctttccataacaccataatgatgtcc |
338 |
Q |
| |
|
||||||| ||||||| ||||| ||||| | ||||||||||||||| || ||||||||||||| ||| |||||| |
|
|
| T |
15464 |
aataacagaaccatctgtatttaccttcagccaaggcgaggaaggcgccttccataacaccaaaattatgtcc |
15392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 334
Target Start/End: Complemental strand, 10138441 - 10138247
Alignment:
| Q |
136 |
actcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaatgttccgagacaatcctg |
235 |
Q |
| |
|
|||||||||| | ||| || |||| ||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || | ||| ||| |
|
|
| T |
10138441 |
actcaatagctaaaataattccaagaacctcggcataaaaaacagt----ataccaatgttacaataaaaagcaccacgaaaggtgcatagatgatcaca |
10138346 |
T |
|
| Q |
236 |
aaacagccctccacaggccgcatgcccaccaataacaaaaccatccgtattgacctttaaccaaggcgaggaaggagctttccataacaccataatgat |
334 |
Q |
| |
|
|||||||||||||| || |||| |||||||| || ||||||||||| || || || |||||||| |||||||| || |||||||| |||| |||||| |
|
|
| T |
10138345 |
gaacagccctccacaagctacatgtccaccaatcaccaaaccatccgtgttaactttcaaccaaggtgaggaaggggccttccataaaaccaaaatgat |
10138247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 15129975 - 15130091
Alignment:
| Q |
18 |
gcattatgccaacgattccgtaataaaataggaactag-agacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctc |
116 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| | ||| || || ||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
|
|
| T |
15129975 |
gcataatgccaacgattacgtaacaaaataggaaccatcaga-ggcttagaaaaaattagaagagcactagtggagtcactctctagccaaatattcctc |
15130073 |
T |
|
| Q |
117 |
catccatgttgagctgca |
134 |
Q |
| |
|
||||| | ||| |||||| |
|
|
| T |
15130074 |
catcctttttgtgctgca |
15130091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 19324311 - 19324222
Alignment:
| Q |
128 |
agctgcaaactcaatagccagaatgatgccaaaaacttctgcataaaaaacagtctgtataccaatgttacaataaaaagcaccgcgaaa |
217 |
Q |
| |
|
|||||||||||||||||| | ||| | |||| || |||| ||||||||||| ||| |||||||| |||||| ||||||| || ||||| |
|
|
| T |
19324311 |
agctgcaaactcaatagctataataaaaccaagcacctctgaataaaaaacagactgaataccaatattacaacaaaaagctcctcgaaa |
19324222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 26867133 - 26867027
Alignment:
| Q |
47 |
aggaactagagacggtttcgaaaaaattagaagagcactagtggagtcactctccagcctaatatgtctccatccatgttgagctgcaaactcaatagcc |
146 |
Q |
| |
|
|||||||| ||| || ||||||||||||| || |||||| | ||||||||| |||| || || || || ||||||||| ||||| ||| ||| ||||| |
|
|
| T |
26867133 |
aggaactaaagaaggattcgaaaaaattaaaatagcacttgaggagtcactttccaaccaaacatttcgccatccatgatgagccgcatgctccatagct |
26867034 |
T |
|
| Q |
147 |
agaatga |
153 |
Q |
| |
|
||||||| |
|
|
| T |
26867033 |
agaatga |
26867027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University