View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12321_low_5 (Length: 247)
Name: NF12321_low_5
Description: NF12321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12321_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2784582 - 2784812
Alignment:
| Q |
1 |
acatacttgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaatttgaggagtgtatacgtgcttcatagtatc |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2784582 |
acataattgagtataattatatgtgtcggtgtcagacacaacgtgtatccgacactaggacacacttaatttgagaagtgtatacgtgcttcatagtatc |
2784681 |
T |
|
| Q |
101 |
agagttaattaactatcaacaaaaagaataaacagaaaaccattcataaagctacattgacgagtgatatatgtatctcacaattctcattattacacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2784682 |
agagttaattaactatcaacaaaaagcataaacagaaaaccattcataaagctacattgacgagtgatatatgtatctcacacttctcattattacacac |
2784781 |
T |
|
| Q |
201 |
attctgttttattatgcttttaagttttaac |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
2784782 |
attctgttttattatgtttttaagttttaac |
2784812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14134725 - 14134805
Alignment:
| Q |
1 |
acatacttgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaatttgaggagtgt |
81 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||| || || |||| ||| ||||||| | ||||| ||||||||| |
|
|
| T |
14134725 |
acataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgt |
14134805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University