View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12322_high_3 (Length: 512)

Name: NF12322_high_3
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12322_high_3
NF12322_high_3
[»] chr3 (13 HSPs)
chr3 (113-494)||(217216-217597)
chr3 (13-102)||(222584-222674)
chr3 (407-494)||(222161-222248)
chr3 (400-490)||(226341-226431)
chr3 (230-319)||(222341-222430)
chr3 (420-491)||(204781-204852)
chr3 (423-490)||(211898-211965)
chr3 (97-158)||(222508-222569)
chr3 (414-490)||(203381-203457)
chr3 (414-491)||(197341-197418)
chr3 (407-490)||(198502-198585)
chr3 (428-491)||(210619-210682)
chr3 (428-494)||(225095-225161)
[»] chr5 (1 HSPs)
chr5 (430-494)||(29838491-29838555)
[»] chr4 (2 HSPs)
chr4 (420-491)||(6903641-6903712)
chr4 (407-490)||(6905028-6905111)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 113 - 494
Target Start/End: Complemental strand, 217597 - 217216
Alignment:
Q  113 aaaatgataaaatgtgttttctcgaaagtctctttacgattgtttagggaatctatttgaaatgctttgtgactcttttacatgattcgatttaattttg 212  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217597 aaaatgataaattgtgcttcctcgaaagtctctttacgattgtttagggaatctatttgaaatgctttgtgactcttttacatgattcgatttaattttg 217498  T
Q  213 acatttggtatgatccattctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttgggtctatggcgacaaaaattgattttgaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  217497 acatttggtatgatccattctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttggttcaatggcgacaaaaattgattttgaa 217398  T
Q  313 caaattgaagaaaagtgaaactaggagaaatagaagcaaaccgattatgtaaatctcaaatgtgtcagccctgctctaaaatttggtcctatactataac 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217397 caaattgaagaaaagtgaaactaggagaaatagaagcaaaccaattatgtaaatctcaaatgtgtcagccctgctctaaaatttggtcctatactataac 217298  T
Q  413 ggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 494  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217297 ggatgaactgttatcactgtagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 217216  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 222674 - 222584
Alignment:
Q  13 ctgtgatattgaagtt-cggaaacgctgctgcttttcacctctatgtgaaggagtgaactgtggttagcttgtaattttatgcttttatat 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  222674 ctgtgatattgaagttacggaaacgctgctgcttttcacctctatgtgaaggagtgaactgtggttagcttgtaattttatgattttatat 222584  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 494
Target Start/End: Complemental strand, 222248 - 222161
Alignment:
Q  407 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 494  Q
    |||||| |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  222248 tataacagatgagttgttatcactgcagagaattccagatggatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 222161  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 490
Target Start/End: Complemental strand, 226431 - 226341
Alignment:
Q  400 cctatactataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 490  Q
    |||||| | |||| |||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  226431 cctatagtgtaacagatgagttgttatcactgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 226341  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 222430 - 222341
Alignment:
Q  230 ttctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttgggtctatggcgacaaaaattgattttgaacaaattg 319  Q
    ||||| || |||||||||||||||||| |||| ||||  | |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  222430 ttctgcttgaggtttatccttctttttcctacaaagttgaattatcttcgtttggttctatggcgccaaaaattgattttgaacaaattg 222341  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 420 - 491
Target Start/End: Original strand, 204781 - 204852
Alignment:
Q  420 ctgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 491  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||||  |||||||||||||||||||||    
T  204781 ctgttatcactgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctaca 204852  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 423 - 490
Target Start/End: Complemental strand, 211965 - 211898
Alignment:
Q  423 ttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 490  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  211965 ttatcactgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 211898  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 222569 - 222508
Alignment:
Q  97 ttatattatgaattacaaaatgataaaatgtgttttctcgaaagtctctttacgattgttta 158  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  222569 ttatattatgaattacaaaatgataaaatgtgctttctcgaaagtctctttataattgttta 222508  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 414 - 490
Target Start/End: Original strand, 203381 - 203457
Alignment:
Q  414 gatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 490  Q
    |||||||||||| ||||||||  |||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  203381 gatgaactgttaacactgcagcaaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 203457  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 197418 - 197341
Alignment:
Q  414 gatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 491  Q
    ||||| ||||||||||||||||||||||| || || ||||||| ||  ||||||||||||||| |||| |||||||||    
T  197418 gatgagctgttatcactgcagagaattcctgaagactttataacaatgtttgggaatgaactcgagaaagttgctaca 197341  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 490
Target Start/End: Complemental strand, 198585 - 198502
Alignment:
Q  407 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 490  Q
    |||||| ||||| || ||| | |||||| |||||||| |||| ||||||||||||||||| || ||||| ||||||||||||||    
T  198585 tataactgatgagctattaacgctgcagcgaattccaaatgagtttataaaaagatttggaaacgaactaaagaatgttgctac 198502  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 491
Target Start/End: Complemental strand, 210682 - 210619
Alignment:
Q  428 actgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 491  Q
    ||||||||||||||||||  | ||||||| ||  ||||||||||||||| ||||||||||||||    
T  210682 actgcagagaattccagaaaactttataacaatgtttgggaatgaactcgagaatgttgctaca 210619  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 225161 - 225095
Alignment:
Q  428 actgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 494  Q
    ||||||||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||    
T  225161 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaatt 225095  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 29838555 - 29838491
Alignment:
Q  430 tgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 494  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  29838555 tgcagagaattccagatgaatttataacaagatttggaaatgaactcaataatgttgctacaatt 29838491  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 420 - 491
Target Start/End: Complemental strand, 6903712 - 6903641
Alignment:
Q  420 ctgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 491  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||||  |||||||||||||||||||||    
T  6903712 ctgttatcactgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctaca 6903641  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 407 - 490
Target Start/End: Complemental strand, 6905111 - 6905028
Alignment:
Q  407 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 490  Q
    |||||| |||||||||||| ||||||||  |||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  6905111 tataactgatgaactgttaacactgcagcaaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 6905028  T

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