View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12322_high_4 (Length: 457)

Name: NF12322_high_4
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12322_high_4
NF12322_high_4
[»] chr3 (13 HSPs)
chr3 (58-439)||(217216-217597)
chr3 (352-439)||(222161-222248)
chr3 (345-435)||(226341-226431)
chr3 (175-264)||(222341-222430)
chr3 (365-436)||(204781-204852)
chr3 (368-435)||(211898-211965)
chr3 (42-103)||(222508-222569)
chr3 (359-435)||(203381-203457)
chr3 (359-436)||(197341-197418)
chr3 (352-435)||(198502-198585)
chr3 (373-436)||(210619-210682)
chr3 (373-439)||(225095-225161)
chr3 (15-47)||(222584-222616)
[»] chr5 (1 HSPs)
chr5 (375-439)||(29838491-29838555)
[»] chr4 (2 HSPs)
chr4 (365-436)||(6903641-6903712)
chr4 (352-435)||(6905028-6905111)


Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 58 - 439
Target Start/End: Complemental strand, 217597 - 217216
Alignment:
Q  58 aaaatgataaaatgtgttttctcgaaagtctctttacgattgtttagggaatctatttgaaatgctttgtgactcttttacatgattcgatttaattttg 157  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217597 aaaatgataaattgtgcttcctcgaaagtctctttacgattgtttagggaatctatttgaaatgctttgtgactcttttacatgattcgatttaattttg 217498  T
Q  158 acatttggtatgatccattctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttgggtctatggcgacaaaaattgattttgaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  217497 acatttggtatgatccattctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttggttcaatggcgacaaaaattgattttgaa 217398  T
Q  258 caaattgaagaaaagtgaaactaggagaaatagaagcaaaccgattatgtaaatctcaaatgtgtcagccctgctctaaaatttggtcctatactataac 357  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217397 caaattgaagaaaagtgaaactaggagaaatagaagcaaaccaattatgtaaatctcaaatgtgtcagccctgctctaaaatttggtcctatactataac 217298  T
Q  358 ggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 439  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  217297 ggatgaactgttatcactgtagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 217216  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 222248 - 222161
Alignment:
Q  352 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 439  Q
    |||||| |||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  222248 tataacagatgagttgttatcactgcagagaattccagatggatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 222161  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 226431 - 226341
Alignment:
Q  345 cctatactataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 435  Q
    |||||| | |||| |||||  |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  226431 cctatagtgtaacagatgagttgttatcactgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 226341  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 222430 - 222341
Alignment:
Q  175 ttctgtttaaggtttatccttcttttttctactaagtctacttatcttcgtttgggtctatggcgacaaaaattgattttgaacaaattg 264  Q
    ||||| || |||||||||||||||||| |||| ||||  | |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  222430 ttctgcttgaggtttatccttctttttcctacaaagttgaattatcttcgtttggttctatggcgccaaaaattgattttgaacaaattg 222341  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 436
Target Start/End: Original strand, 204781 - 204852
Alignment:
Q  365 ctgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 436  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||||  |||||||||||||||||||||    
T  204781 ctgttatcactgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctaca 204852  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 211965 - 211898
Alignment:
Q  368 ttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 435  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  211965 ttatcactgcagagaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 211898  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 222569 - 222508
Alignment:
Q  42 ttatattatgaattacaaaatgataaaatgtgttttctcgaaagtctctttacgattgttta 103  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  222569 ttatattatgaattacaaaatgataaaatgtgctttctcgaaagtctctttataattgttta 222508  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 203381 - 203457
Alignment:
Q  359 gatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 435  Q
    |||||||||||| ||||||||  |||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  203381 gatgaactgttaacactgcagcaaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 203457  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 197418 - 197341
Alignment:
Q  359 gatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 436  Q
    ||||| ||||||||||||||||||||||| || || ||||||| ||  ||||||||||||||| |||| |||||||||    
T  197418 gatgagctgttatcactgcagagaattcctgaagactttataacaatgtttgggaatgaactcgagaaagttgctaca 197341  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 198585 - 198502
Alignment:
Q  352 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 435  Q
    |||||| ||||| || ||| | |||||| |||||||| |||| ||||||||||||||||| || ||||| ||||||||||||||    
T  198585 tataactgatgagctattaacgctgcagcgaattccaaatgagtttataaaaagatttggaaacgaactaaagaatgttgctac 198502  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 436
Target Start/End: Complemental strand, 210682 - 210619
Alignment:
Q  373 actgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 436  Q
    ||||||||||||||||||  | ||||||| ||  ||||||||||||||| ||||||||||||||    
T  210682 actgcagagaattccagaaaactttataacaatgtttgggaatgaactcgagaatgttgctaca 210619  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 225161 - 225095
Alignment:
Q  373 actgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 439  Q
    ||||||||||||||| || |  ||||||| || || |||||  ||||||||||||||||||||||||    
T  225161 actgcagagaattcctgaagtctttataacaatatatgggagcgaactcaagaatgttgctacaatt 225095  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 222616 - 222584
Alignment:
Q  15 ctgtggttagcttgtaattttatgcttttatat 47  Q
    |||||||||||||||||||||||| ||||||||    
T  222616 ctgtggttagcttgtaattttatgattttatat 222584  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 29838555 - 29838491
Alignment:
Q  375 tgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctacaatt 439  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||    
T  29838555 tgcagagaattccagatgaatttataacaagatttggaaatgaactcaataatgttgctacaatt 29838491  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 6903712 - 6903641
Alignment:
Q  365 ctgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctaca 436  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||||  |||||||||||||||||||||    
T  6903712 ctgttatcactgcagagaatttcagatgagtttataacaagatttgggatagaactcaagaatgttgctaca 6903641  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 6905111 - 6905028
Alignment:
Q  352 tataacggatgaactgttatcactgcagagaattccagatgaatttataaaaagatttgggaatgaactcaagaatgttgctac 435  Q
    |||||| |||||||||||| ||||||||  |||||||||||| ||||||| ||||||||||||||||||| | |||||||||||    
T  6905111 tataactgatgaactgttaacactgcagcaaattccagatgagtttataacaagatttgggaatgaactcgacaatgttgctac 6905028  T

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