View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12322_low_1 (Length: 602)

Name: NF12322_low_1
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12322_low_1
NF12322_low_1
[»] chr3 (34 HSPs)
chr3 (19-466)||(3554564-3555014)
chr3 (107-249)||(3584389-3584531)
chr3 (462-586)||(3552317-3552441)
chr3 (260-371)||(3583879-3583993)
chr3 (259-371)||(3551616-3551730)
chr3 (501-586)||(18034999-18035085)
chr3 (507-587)||(15686260-15686341)
chr3 (521-586)||(31649681-31649745)
chr3 (530-586)||(295459-295515)
chr3 (491-586)||(17042857-17042953)
chr3 (491-586)||(18064309-18064405)
chr3 (484-586)||(14406733-14406835)
chr3 (530-583)||(15635980-15636033)
chr3 (522-587)||(23954660-23954725)
chr3 (530-586)||(17702405-17702461)
chr3 (534-586)||(18547651-18547703)
chr3 (522-586)||(19531987-19532051)
chr3 (530-586)||(28051135-28051191)
chr3 (506-586)||(6580970-6581051)
chr3 (530-583)||(13790678-13790731)
chr3 (530-586)||(24195523-24195578)
chr3 (371-479)||(269369-269478)
chr3 (486-586)||(18476885-18476984)
chr3 (517-586)||(11558422-11558490)
chr3 (517-586)||(11567691-11567759)
chr3 (530-586)||(44452479-44452535)
chr3 (530-586)||(1919340-1919395)
chr3 (530-586)||(13524785-13524840)
chr3 (486-586)||(8224794-8224894)
chr3 (371-424)||(980643-980696)
chr3 (506-586)||(9031485-9031565)
chr3 (522-586)||(286996-287060)
chr3 (522-586)||(20748268-20748330)
chr3 (538-586)||(21719029-21719076)
[»] chr8 (21 HSPs)
chr8 (371-583)||(12814699-12814912)
chr8 (371-586)||(24384396-24384616)
chr8 (485-586)||(1562471-1562572)
chr8 (532-586)||(24091958-24092012)
chr8 (491-586)||(23249694-23249789)
chr8 (530-586)||(45133663-45133719)
chr8 (490-583)||(18753842-18753936)
chr8 (449-586)||(20254987-20255127)
chr8 (491-586)||(9996458-9996554)
chr8 (532-583)||(11221374-11221425)
chr8 (522-585)||(12240229-12240292)
chr8 (532-586)||(23541515-23541569)
chr8 (491-586)||(25240364-25240460)
chr8 (507-586)||(33466264-33466343)
chr8 (506-586)||(17279863-17279943)
chr8 (530-586)||(33977057-33977113)
chr8 (369-420)||(33466432-33466483)
chr8 (548-586)||(8726861-8726899)
chr8 (548-586)||(39080982-39081020)
chr8 (541-586)||(22476240-22476285)
chr8 (491-586)||(1683937-1684030)
[»] chr1 (23 HSPs)
chr1 (371-586)||(17379726-17379942)
chr1 (371-586)||(51472196-51472412)
chr1 (371-586)||(17355934-17356150)
chr1 (408-582)||(8281796-8281971)
chr1 (491-586)||(12753020-12753116)
chr1 (484-586)||(18390208-18390311)
chr1 (530-586)||(20859646-20859702)
chr1 (486-586)||(23478038-23478139)
chr1 (530-586)||(4246034-4246090)
chr1 (530-586)||(26972504-26972560)
chr1 (532-586)||(17851476-17851530)
chr1 (491-578)||(41330913-41331001)
chr1 (530-584)||(11667968-11668022)
chr1 (532-586)||(20841368-20841422)
chr1 (522-583)||(15804217-15804278)
chr1 (530-586)||(1973312-1973368)
chr1 (491-586)||(10340260-10340356)
chr1 (530-586)||(14745886-14745942)
chr1 (484-564)||(18379856-18379937)
chr1 (548-586)||(17012019-17012057)
chr1 (548-586)||(45599433-45599471)
chr1 (491-586)||(17038207-17038301)
chr1 (522-586)||(33062377-33062440)
[»] chr4 (26 HSPs)
chr4 (374-586)||(16655443-16655656)
chr4 (491-586)||(33737943-33738038)
chr4 (490-586)||(10198355-10198451)
chr4 (530-586)||(10190885-10190941)
chr4 (484-586)||(2679802-2679904)
chr4 (392-586)||(41785291-41785489)
chr4 (530-586)||(15700415-15700472)
chr4 (491-586)||(9068904-9069000)
chr4 (530-586)||(13399408-13399464)
chr4 (518-586)||(16383877-16383945)
chr4 (522-586)||(32861638-32861702)
chr4 (491-586)||(33745922-33746018)
chr4 (491-586)||(19659398-19659493)
chr4 (486-586)||(28019258-28019359)
chr4 (258-318)||(53326118-53326179)
chr4 (530-586)||(33899093-33899149)
chr4 (535-586)||(18618221-18618272)
chr4 (530-586)||(25116822-25116880)
chr4 (532-586)||(15162592-15162646)
chr4 (506-586)||(46741854-46741934)
chr4 (522-586)||(50907842-50907906)
chr4 (532-583)||(10724260-10724311)
chr4 (532-583)||(10938029-10938080)
chr4 (522-586)||(25354740-25354803)
chr4 (522-567)||(26244988-26245033)
chr4 (522-586)||(23541235-23541298)
[»] chr2 (20 HSPs)
chr2 (371-586)||(23801911-23802115)
chr2 (395-583)||(27106738-27106930)
chr2 (395-586)||(31587334-31587530)
chr2 (392-585)||(21250302-21250500)
chr2 (484-586)||(27111032-27111134)
chr2 (486-586)||(21530339-21530440)
chr2 (530-586)||(36398899-36398955)
chr2 (525-586)||(19466627-19466688)
chr2 (530-586)||(12910488-12910544)
chr2 (530-586)||(23758624-23758680)
chr2 (530-586)||(24790263-24790319)
chr2 (484-586)||(19198383-19198485)
chr2 (522-584)||(24283635-24283697)
chr2 (522-586)||(12952463-12952527)
chr2 (522-586)||(20649661-20649725)
chr2 (484-582)||(25347149-25347244)
chr2 (522-586)||(24317914-24317979)
chr2 (522-586)||(18765667-18765730)
chr2 (549-587)||(15328326-15328364)
chr2 (371-423)||(29565850-29565902)
[»] chr6 (26 HSPs)
chr6 (391-578)||(20765106-20765293)
chr6 (490-587)||(30424893-30424991)
chr6 (491-586)||(24501783-24501879)
chr6 (468-586)||(18152810-18152928)
chr6 (532-586)||(13195324-13195378)
chr6 (468-586)||(26965675-26965796)
chr6 (522-586)||(9281813-9281877)
chr6 (530-586)||(15897778-15897834)
chr6 (522-586)||(25782802-25782866)
chr6 (522-586)||(25805444-25805508)
chr6 (532-586)||(33665794-33665848)
chr6 (530-586)||(17234590-17234646)
chr6 (530-586)||(23882798-23882854)
chr6 (522-573)||(17528002-17528053)
chr6 (530-586)||(14258909-14258965)
chr6 (530-586)||(17855193-17855249)
chr6 (530-586)||(20470307-20470363)
chr6 (530-586)||(20989869-20989925)
chr6 (532-586)||(17864529-17864583)
chr6 (517-586)||(12444824-12444892)
chr6 (532-584)||(12039788-12039840)
chr6 (534-573)||(8465785-8465824)
chr6 (522-584)||(11960472-11960534)
chr6 (530-564)||(17869944-17869978)
chr6 (530-564)||(17879696-17879730)
chr6 (522-586)||(15007441-15007503)
[»] scaffold0505 (1 HSPs)
scaffold0505 (371-586)||(10140-10357)
[»] chr7 (47 HSPs)
chr7 (371-584)||(23580059-23580273)
chr7 (444-571)||(23296412-23296540)
chr7 (484-584)||(20596930-20597030)
chr7 (388-586)||(24901961-24902161)
chr7 (447-586)||(26133018-26133156)
chr7 (482-584)||(10251390-10251493)
chr7 (487-584)||(14926602-14926700)
chr7 (487-584)||(15350068-15350166)
chr7 (521-586)||(7508425-7508490)
chr7 (491-586)||(10658342-10658438)
chr7 (530-586)||(20991541-20991597)
chr7 (522-586)||(31269158-31269222)
chr7 (522-583)||(23057197-23057258)
chr7 (532-584)||(4458740-4458792)
chr7 (491-586)||(23956836-23956932)
chr7 (491-586)||(42636206-42636302)
chr7 (496-586)||(7586634-7586724)
chr7 (468-586)||(19353069-19353185)
chr7 (530-584)||(11521516-11521570)
chr7 (522-586)||(645124-645188)
chr7 (530-586)||(11588463-11588519)
chr7 (534-586)||(16207985-16208037)
chr7 (522-569)||(21260506-21260553)
chr7 (493-586)||(23082877-23082972)
chr7 (509-557)||(10038867-10038916)
chr7 (522-586)||(2076497-2076560)
chr7 (522-586)||(2082916-2082979)
chr7 (500-586)||(6045288-6045375)
chr7 (491-586)||(9564216-9564310)
chr7 (526-586)||(9894170-9894230)
chr7 (530-586)||(10309593-10309649)
chr7 (534-586)||(16436777-16436829)
chr7 (532-583)||(10279816-10279866)
chr7 (522-581)||(11407058-11407117)
chr7 (485-583)||(14687322-14687419)
chr7 (502-586)||(14984642-14984726)
chr7 (502-586)||(15414253-15414337)
chr7 (484-584)||(20588813-20588912)
chr7 (371-422)||(4548019-4548070)
chr7 (547-586)||(29546241-29546280)
chr7 (548-586)||(48797722-48797760)
chr7 (391-432)||(23393696-23393737)
chr7 (370-423)||(24049372-24049425)
chr7 (491-586)||(4794693-4794787)
chr7 (397-425)||(4794858-4794886)
chr7 (522-586)||(14165156-14165220)
chr7 (522-586)||(42782747-42782810)
[»] chr5 (25 HSPs)
chr5 (371-517)||(25668209-25668355)
chr5 (491-586)||(13942102-13942198)
chr5 (490-586)||(24117553-24117650)
chr5 (522-586)||(13338583-13338646)
chr5 (522-586)||(18221101-18221165)
chr5 (530-586)||(22404866-22404922)
chr5 (530-586)||(30605795-30605851)
chr5 (485-583)||(17661518-17661615)
chr5 (530-586)||(26036809-26036865)
chr5 (534-587)||(13735077-13735130)
chr5 (502-586)||(17920888-17920972)
chr5 (491-586)||(22130939-22131033)
chr5 (530-586)||(23420666-23420722)
chr5 (530-586)||(26329318-26329374)
chr5 (520-571)||(22979734-22979784)
chr5 (532-583)||(24189863-24189914)
chr5 (532-586)||(20714841-20714895)
chr5 (522-586)||(11204713-11204776)
chr5 (491-586)||(20845899-20845994)
chr5 (534-586)||(23623880-23623932)
chr5 (530-586)||(25105525-25105581)
chr5 (530-586)||(25164618-25164674)
chr5 (487-587)||(22184701-22184801)
chr5 (517-583)||(26183342-26183407)
chr5 (522-586)||(7898019-7898082)
[»] scaffold0423 (1 HSPs)
scaffold0423 (522-583)||(13598-13659)
[»] scaffold0520 (1 HSPs)
scaffold0520 (490-564)||(5376-5451)
[»] scaffold0103 (1 HSPs)
scaffold0103 (530-586)||(25778-25834)
[»] scaffold0102 (1 HSPs)
scaffold0102 (530-586)||(37004-37060)
[»] scaffold0059 (2 HSPs)
scaffold0059 (530-586)||(50196-50252)
scaffold0059 (487-586)||(61578-61677)
[»] scaffold0022 (1 HSPs)
scaffold0022 (522-586)||(3114-3177)
[»] scaffold0226 (3 HSPs)
scaffold0226 (532-583)||(7647-7698)
scaffold0226 (532-586)||(18230-18285)
scaffold0226 (532-586)||(27624-27679)
[»] scaffold0190 (1 HSPs)
scaffold0190 (531-586)||(16729-16784)
[»] scaffold0015 (1 HSPs)
scaffold0015 (512-586)||(202375-202450)
[»] scaffold0143 (2 HSPs)
scaffold0143 (507-586)||(36273-36352)
scaffold0143 (369-420)||(36133-36184)
[»] scaffold0003 (1 HSPs)
scaffold0003 (534-586)||(26407-26459)
[»] scaffold0072 (1 HSPs)
scaffold0072 (548-586)||(18566-18604)
[»] scaffold0088 (1 HSPs)
scaffold0088 (537-586)||(36598-36647)
[»] scaffold0037 (1 HSPs)
scaffold0037 (530-586)||(110361-110418)
[»] scaffold0333 (1 HSPs)
scaffold0333 (530-586)||(5645-5700)
[»] scaffold0259 (1 HSPs)
scaffold0259 (538-586)||(17382-17430)
[»] scaffold0035 (1 HSPs)
scaffold0035 (522-586)||(37357-37420)
[»] scaffold0008 (1 HSPs)
scaffold0008 (530-586)||(40334-40389)
[»] scaffold0032 (1 HSPs)
scaffold0032 (548-586)||(103122-103160)
[»] scaffold0185 (1 HSPs)
scaffold0185 (534-586)||(2463-2515)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 3555014 - 3554564
Alignment:
Q  19 gagggagtattgttgcgttttggagtatgggaatgaatgagaacgtgagtgatatagagagag--gagaggatcactcaacannnnnnnnaatatttgaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||        |||||||||     
T  3555014 gagggagtattgttgcgttttggagtatgggaatgaatgagaacgtgagtgatatagagagagaggagaggatcactcaacattttttttaatatttgag 3554915  T
Q  117 tttagtctgtaaataaatatagtttggtatgtaacatagcatatttatgtaatacacgagtttgacatatcttatggccaactatatcaataatcgtctt 216  Q
    |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3554914 tttgctctgtaactaaatatagtttggtatgtaacatagcatatttatgtaatacacgactttgacatatcttatggccaactatatcaataatcgtctt 3554815  T
Q  217 acattcttatctatttataataatttttggcacnnnnnnncgcatatattgttataagttggtaatatggtaaatgtgtataatttgttta-aattgttg 315  Q
    |||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3554814 acattcttatctatttataataatttttggcactttttttctcatatattgttataagttggtaatatggtaaatgtgtataatttgtttataattgttg 3554715  T
Q  316 ttaaacctttatagtgtcatcgtgaatttagcttagttgaaaggatattgtattatgaaattctagcaagtaagttttaagatgttctatgcgatgttcc 415  Q
    |||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3554714 ttaaacatttttaatgtcgtcgtgaatttagcttagttgaaaggatattgtattatgaaattctagcaagtaagttttaagatgttctatgcgatcttcc 3554615  T
Q  416 aacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcatac 466  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3554614 aacaccagacgcacaaatacgaatgttgaacttaatgtttcaacatcatac 3554564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 3584531 - 3584389
Alignment:
Q  107 aatatttgaatttagtctgtaaataaatatagtttggtatgtaacatagcatatttatgtaatacacgagtttgacatatcttatggccaactatatcaa 206  Q
    ||||||||| ||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||    
T  3584531 aatatttgagtttggtctgtaactaaatatagtttggtccgtaacatagcatatttatgtaatacacacgtttgacatatcttatggccaactatataaa 3584432  T
Q  207 taatcgtcttacattcttatctatttataataatttttggcac 249  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  3584431 caatcgtcttacattcttatctatttataataatttttggcac 3584389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 462 - 586
Target Start/End: Complemental strand, 3552441 - 3552317
Alignment:
Q  462 cataccaacaaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggg 561  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  3552441 cataccaacaaacataaattacgtaaaagtagaagacaagaaaataaaaggcacaagcgattgttaatccagttcggtgacaaacgcacctactcttggg 3552342  T
Q  562 gctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| |||| |||||||    
T  3552341 gctaccaagccaggaagaaaatcca 3552317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 3583993 - 3583879
Alignment:
Q  260 atatattgttataagttggtaatatggtaaatgtgtataatttgttta-aattgttgttaa--acctttatagtgtcatcgtgaatttagcttagttgaa 356  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||     ||| |||||||||||| |||||||| | ||||||    
T  3583993 atatattattaaaagttggtaatatggtaaatgtgtataatttgtttataattgttgttaatgttttttttagtgtcatcgtaaatttagcatcgttgaa 3583894  T
Q  357 aggatattgtattat 371  Q
    | |||||||||||||    
T  3583893 atgatattgtattat 3583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 3551730 - 3551616
Alignment:
Q  259 catatattgttataagttggtaatatggtaaatgtgtataatttgttta-aattgttgtt-aaacctttatagtgtcatcgtgaatttagcttagttgaa 356  Q
    |||||||| ||| |||||||||||  ||||||||||||||||||||||| |||||||||| |||   ||  |||||| |||||||||||||||| |||||    
T  3551730 catatattattaaaagttggtaatgcggtaaatgtgtataatttgtttataattgttgttaaaaaaatttcagtgtcttcgtgaatttagcttatttgaa 3551631  T
Q  357 aggatattgtattat 371  Q
    |||||||||||||||    
T  3551630 aggatattgtattat 3551616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 501 - 586
Target Start/End: Complemental strand, 18035085 - 18034999
Alignment:
Q  501 gaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| |||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  18035085 gaaagtaaaagacacaatgagtttgttaacccagttcggtgacaaacacacctactcttgaggctaccaagccaggaaggaaatcca 18034999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 507 - 587
Target Start/End: Complemental strand, 15686341 - 15686260
Alignment:
Q  507 aaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatccat 587  Q
    |||||||||| |||| ||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  15686341 aaaaggcacatagagtttgttgacccagttcgatgacaaacacacctactctaggggctaccaagccaggaaggaaatccat 15686260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 521 - 586
Target Start/End: Original strand, 31649681 - 31649745
Alignment:
Q  521 attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  31649681 attgttaatccagttcggtgacaaacacacctactc-tgggtctaccaagccaggaaggaaatcca 31649745  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 295459 - 295515
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  295459 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 295515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 17042953 - 17042857
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| | |||||||||||| | | ||||||| |||||| ||||||||||||||||||||| | |||||||||| || ||||||||||||    
T  17042953 taaaagacaagagagtaaaaggcacaacaagtttgttaaaccagtttggtgacaaacacacctactctggaggctaccaaggcaggaaggaaatcca 17042857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 18064405 - 18064309
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| |||| |||| |||||| ||||| ||| ||||||| |||||||||||||||||||||||||||| | |||||||||| || ||||||||||||    
T  18064405 taaatgacaggaaagtaaaagacacaatgagtttgttaacccagttcggtgacaaacacacctactctagaggctaccaaggcaggaaggaaatcca 18064309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 586
Target Start/End: Complemental strand, 14406835 - 14406733
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    ||||||||||| ||||  ||| ||||||||||| ||| || ||||| |||||||||||||||||||||||||| |  |||||||||||||| ||||||||    
T  14406835 gtaaaagtaaatgacat-aaagtaaaaggcacatgaggtttgttaacccagttcggtgacaaacacacctactttgtgggctaccaagccaggaaggaaa 14406737  T
Q  583 tcca 586  Q
    ||||    
T  14406736 tcca 14406733  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 15636033 - 15635980
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15636033 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaat 15635980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 23954725 - 23954660
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatccat 587  Q
    ||||| ||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||    
T  23954725 ttgttgatccagttcggtggcaaacacacctactctggaggctaccaagccaggaaggaaatccat 23954660  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 17702405 - 17702461
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  17702405 ccagttcggtgacaaacacaactactctgggggctaccaagccaggaaggaaatcca 17702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 18547651 - 18547703
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  18547651 ttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 18547703  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 19532051 - 19531987
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| ||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  19532051 ttgttgatccaattcggtgacaaacacacctactttgggggctaccaagccaggaaggaaatcca 19531987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 28051135 - 28051191
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  28051135 ccagtttggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 28051191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 506 - 586
Target Start/End: Complemental strand, 6581051 - 6580970
Alignment:
Q  506 taaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| | | ||||||| ||||||||||||||||||||||||||||   |||||||||||||  |||||||||||    
T  6581051 taaaaggcacaacaagtttgttaacccagttcggtgacaaacacacctactctgaaggctaccaagccagcaaggaaatcca 6580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 530 - 583
Target Start/End: Original strand, 13790678 - 13790731
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  13790678 ccagttcggtgacaaacacacctactatgggggctaccaagccaagaaggaaat 13790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 24195523 - 24195578
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  24195523 ccagttcggtgaaaaacacacctactct-ggggctaccaagccaagaaggaaatcca 24195578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 269478 - 269369
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcaca-aatatgaatgttgaacttaatgtttcaacatcataccaa 469  Q
    ||||||||||||  || ||||  ||||||||||||||||||||||||||||||   |||| || | | |||||||  ||||||||| |||||||| | ||    
T  269478 tgaaattctagcgcgttagttagaagatgttctatgcgatgttccaacaccaggtacacagaaaacggatgttgagtttaatgtttaaacatcatgctaa 269379  T
Q  470 caaacataaa 479  Q
    ||||||||||    
T  269378 caaacataaa 269369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 586
Target Start/End: Original strand, 18476885 - 18476984
Alignment:
Q  486 aaaagtaaaagacaagaaaataaaaggcac-aagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||| |||||||||||||| |||||||||| ||||| ||||||| |||||||||  || ||| |||||||   |||||||||||||||| ||||||||||    
T  18476885 aaaaataaaagacaagaaagtaaaaggcacaaagagtttgttaacccagttcgg-cac-aactcacctacatctggggctaccaagccaggaaggaaatc 18476982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 11558490 - 11558422
Alignment:
Q  517 agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||| | ||||||||||||| |||||||||| | | ||||||||||||| ||||||||||||    
T  11558490 agagtttgttaaccaagttcggtgacaa-cacacctactatggaggctaccaagccaggaaggaaatcca 11558422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 11567759 - 11567691
Alignment:
Q  517 agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||| | ||||||||||||| |||||||||| | | ||||||||||||| ||||||||||||    
T  11567759 agagtttgttaaccaagttcggtgacaa-cacacctactatggaggctaccaagccaggaaggaaatcca 11567691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 44452479 - 44452535
Alignment:
Q  530 ccagttcggtgacaaacacacctac-tcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||    
T  44452479 ccagttcggtgacaaacacacctacgtctaggggct-ccaagccaggaaggaaatcca 44452535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 1919395 - 1919340
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||  ||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  1919395 ccagttccatgacaaacacacctactat-ggggctaccaagccaagaaggaaatcca 1919340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 13524840 - 13524785
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||| ||||||||||| |||||||||||| || ||||||||||||    
T  13524840 ccagttcggtcacaaa-acacctactctgggggctaccaagtcaagaaggaaatcca 13524785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 586
Target Start/End: Original strand, 8224794 - 8224894
Alignment:
Q  486 aaaagtaaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctac-tcttggggctaccaagccatgaaggaaat 583  Q
    |||| |||||||||||||| ||||||||||| | || ||||||| |||||| |  |  |||| ||||||| ||| ||||||||||||||| |||||||||    
T  8224794 aaaaataaaagacaagaaagtaaaaggcacacaaagtttgttaacccagtttg--gcaaaactcacctacatctgggggctaccaagccaggaaggaaat 8224891  T
Q  584 cca 586  Q
    |||    
T  8224892 cca 8224894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 980696 - 980643
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccaga 424  Q
    |||||||||||||    ||||||||||| ||||||| |||||||||||||||||    
T  980696 tgaaattctagcacactagttttaagatattctatgtgatgttccaacaccaga 980643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 586
Target Start/End: Complemental strand, 9031565 - 9031485
Alignment:
Q  506 taaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| |||||| ||| ||||||| ||||||||||| |||   |||||||||| |||||||||||| || ||||||||||||    
T  9031565 taaaaagcacaatgagtttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagtcaggaaggaaatcca 9031485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 287060 - 286996
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| | |||||| |||||||||||| |||| | ||| ||||||| ||| ||||||||||||    
T  287060 ttgttaacctagttcgatgacaaacacacttactatggggactaccaaaccaggaaggaaatcca 286996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 20748330 - 20748268
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||| ||||||||||||||||| ||||||||||||    
T  20748330 ttgttaacccagttcggtg-caacatcacctact-ttggggctaccaagccaggaaggaaatcca 20748268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 21719076 - 21719029
Alignment:
Q  538 gtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||||    
T  21719076 gtgacaaacacacctactctaagg-ctaccaagccaggaaggaaatcca 21719029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 5e-67; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 371 - 583
Target Start/End: Complemental strand, 12814912 - 12814699
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| | | |||    
T  12814912 tgaaattctagtacgttagtttcaagatgttctatgtgatgttccaacactagacgcacaaatacgaattttgaacttaatgtttcaacatcgtgctaac 12814813  T
Q  471 aaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaa 569  Q
     | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||| |||||||||||    
T  12814812 tatcacaaattacgtaaaagtaaaagacaagaaaataaaaggcacaagagaattgttaacccaatttggtgacaaacacacctactctgggggctaccaa 12814713  T
Q  570 gccatgaaggaaat 583  Q
    |||| |||||||||    
T  12814712 gccaggaaggaaat 12814699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 371 - 586
Target Start/End: Original strand, 24384396 - 24384616
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||| ||  || |||||| ||||||| ||||||| ||||||||||||||| || ||| | |||||||||||||||||||| ||||| || | |||    
T  24384396 tgaaattctggcgcgttagttttcagatgttatatgcgacgttccaacaccagacaca-aaagacgaatgttgaacttaatgtttaaacataatgctaac 24384494  T
Q  471 aaacataaat-----tacgtaaaagtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggct 564  Q
    ||  | ||||     |||||||||||||||||||||||| |||| || ||| | || |||||||  || ||||||||||||||||| |||||| ||||||    
T  24384495 aagaacaaatagaaatacgtaaaagtaaaagacaagaaagtaaatggaacaggtgaattgttaactcaattcggtgacaaacacacgtactctgggggct 24384594  T
Q  565 accaagccatgaaggaaatcca 586  Q
    ||||||||| |||| |||||||    
T  24384595 accaagccaggaagaaaatcca 24384616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 485 - 586
Target Start/End: Complemental strand, 1562572 - 1562471
Alignment:
Q  485 taaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||| |||| |||| ||||| ||||| ||| || ||||| ||||||||| |||||||||||||||| | ||||||||||||||| |||||||||    
T  1562572 taaaagtaaatgaca-gaaagtaaaaagcacaggaggtttgttaacccagttcggcgacaaacacacctactttgggggctaccaagccaggaaggaaat 1562474  T
Q  584 cca 586  Q
    |||    
T  1562473 cca 1562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 24091958 - 24092012
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24091958 agttcggtgacaaacacacctactctaggggctaccaagccaggaaggaaatcca 24092012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 23249694 - 23249789
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||||||||| ||| ||||||| ||| ||||||| |||   |||||||||| ||||||||||||||| ||||||||||||    
T  23249694 taaaagacaagaaagtaaaaggcacaacgagtttgttaacccaattcggtg-caacgtcacctactctgggggctaccaagccaagaaggaaatcca 23249789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 45133663 - 45133719
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  45133663 ccagttcggtgacaaacacacctactctgggggctatcaagccaggaaggaaatcca 45133719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 583
Target Start/End: Original strand, 18753842 - 18753936
Alignment:
Q  490 gtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||| ||||||||| ||||||||| | |||| ||||||| |||||||| ||||||| |||||||||||  |||||| ||||||| |||||||||    
T  18753842 gtaaatgacaagaaagtaaaaggcataggagaattgttaacccagttcgatgacaaatacacctactctaagggctatcaagccaagaaggaaat 18753936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 586
Target Start/End: Complemental strand, 20255127 - 20254987
Alignment:
Q  449 aatgtttcaacatcataccaacaaacataaattacgtaa--aagtaaaagacaagaaaataaaaggca-caagagattgttaatccagttcggtgacaaa 545  Q
    |||||| |||||||||   || |||||||||||||| ||  || |||| ||||||||| ||||||||| | | || ||||| | ||||||||||||||||    
T  20255127 aatgttccaacatcatgataataaacataaattacgcaagaaaataaatgacaagaaagtaaaaggcagcgacagtttgttgacccagttcggtgacaaa 20255028  T
Q  546 cacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||  |||| | ||||||||||||| | ||||||||||||    
T  20255027 cacatgtactatgggggctaccaagctaggaaggaaatcca 20254987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 9996458 - 9996554
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||| ||||  | | ||||||| |||||||||||||||||||||||||||| | | |||||||| || ||| ||||||||    
T  9996458 taaaagacaagaaagtaaaagacacagcaagtttgttaacccagttcggtgacaaacacacctactctggagactaccaagtcaggaatgaaatcca 9996554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 11221425 - 11221374
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||||||    
T  11221425 agttcggtgacaaacacacctactctgggggctaccaaaccaggaaggaaat 11221374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 585
Target Start/End: Original strand, 12240229 - 12240292
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcc 585  Q
    ||||||| |||||||||||||||||||||||||||  | ||||||||| ||| |||||||||||    
T  12240229 ttgttaacccagttcggtgacaaacacacctactccggaggctaccaaaccaggaaggaaatcc 12240292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 23541569 - 23541515
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  23541569 agttcggtgacaaacacacctactctgggggctaccaaaccgggaaggaaatcca 23541515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 25240364 - 25240460
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||||| ||||||| |||  ||| ||||| | |||||||||||||||||||||||||    ||||||||||| ||| ||||||||||||    
T  25240364 taaatgacaagaaagtaaaaggtacattgagtttgtttacccagttcggtgacaaacacacctaccaagggggctaccaaaccaggaaggaaatcca 25240460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 586
Target Start/End: Complemental strand, 33466343 - 33466264
Alignment:
Q  507 aaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| |||| ||||||||||||||||||| |||   |||||||||| ||||||||||||||| |||| |||||||    
T  33466343 aaaaggcacagagagtttgttaatccagttcggtg-caacgtcacctactctgggggctaccaagccaggaagaaaatcca 33466264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 586
Target Start/End: Original strand, 17279863 - 17279943
Alignment:
Q  506 taaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| |||| ||||||| ||||||||||| |||   |||||||||| |||| |||||||||| ||||||||||||    
T  17279863 taaaaggcacagagagtttgttaacccagttcggtg-caacgtcacctactctgggggataccaagccaggaaggaaatcca 17279943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 33977057 - 33977113
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| |||||| |||||||||| |||||||||||| ||  |||||||||||    
T  33977057 ccagttcggtaacaaacgcacctactctgggggctaccaagtcagaaaggaaatcca 33977113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 33466483 - 33466432
Alignment:
Q  369 tatgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacac 420  Q
    |||||||||||| || |||||| |||| ||||||| ||||||||||||||||    
T  33466483 tatgaaattctaacacgtaagtcttaaaatgttctctgcgatgttccaacac 33466432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 8726861 - 8726899
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  8726861 cacctactctgggggctaccaagccaggaaggaaatcca 8726899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 39080982 - 39081020
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39080982 cacctactctgggggctaccaagccaggaaggaaatcca 39081020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 586
Target Start/End: Original strand, 22476240 - 22476285
Alignment:
Q  541 acaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||| |  |||||||||||||| ||||||||||||    
T  22476240 acaaacacacctactttgagggctaccaagccaggaaggaaatcca 22476285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 1683937 - 1684030
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaag-agattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||||||||| || ||||||| ||| ||||||| |||   ||||||||| ||| |||||||||||| | ||||||||||    
T  1683937 taaaagacaagaaagtaaaaggcacaagaagtttgttaacccaattcggtg-caacgtcacctactc-tggcgctaccaagcca-ggaggaaatcca 1684030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 371 - 586
Target Start/End: Complemental strand, 17379942 - 17379726
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcatac-caa 469  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||  ||||||||| |||||| |||  ||    
T  17379942 tgaaattctagcacgttagttttaagatgttctatgcgatgttccaacaccagacacacaaaaacgaatgttgagtttaatgtttaaacatcgtacttaa 17379843  T
Q  470 caaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctacca 568  Q
    | |||||||| |||||||| || | |||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17379842 ctaacataaaatacgtaaatgt-agagacaagaaaataaaaggcacaggagaattgttaacccagttcggtgacaaacacacctactctgggggctacca 17379744  T
Q  569 agccatgaaggaaatcca 586  Q
    ||||| ||||||||||||    
T  17379743 agccaggaaggaaatcca 17379726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 371 - 586
Target Start/End: Complemental strand, 51472412 - 51472196
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    |||||||| |||| || |||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||||||||| | |||    
T  51472412 tgaaattccagcacgttagttctaagacgttctatgcgatgttccaacaccagacacacaaatacgaatgttgagcttaatgtctcaacatcatgcaaac 51472313  T
Q  471 aaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaa 569  Q
     |||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| ||| ||| ||||||||||||| |||||| |||||||||||    
T  51472312 caacataaaatacgtaaaattaaaagacaagaaaataaaaggcacatgagaattgttaacccaattcagtgacaaacacacatactctgggggctaccaa 51472213  T
Q  570 gccatgaaggaaatcca 586  Q
     ||| ||||||||||||    
T  51472212 accaagaaggaaatcca 51472196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 371 - 586
Target Start/End: Complemental strand, 17356150 - 17355934
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcatac-caa 469  Q
    |||||||||||||  | |||||||||||||| ||||||||||||||||||||||| |||||| |  ||||||||  ||||||||| ||||||||||  ||    
T  17356150 tgaaattctagcacattagttttaagatgttttatgcgatgttccaacaccagacacacaaaaacaaatgttgagtttaatgtttaaacatcatacttaa 17356051  T
Q  470 caaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctacca 568  Q
    | |||||||| |||||||| || | ||||||||||||||||| || | ||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17356050 ctaacataaaatacgtaaatgt-agagacaagaaaataaaagtcataggagaattgttaacccagttcggtgacaaacacacctactctgggggctacca 17355952  T
Q  569 agccatgaaggaaatcca 586  Q
    ||||  ||||||||||||    
T  17355951 agcctggaaggaaatcca 17355934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 408 - 582
Target Start/End: Original strand, 8281796 - 8281971
Alignment:
Q  408 gatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaacaaacataaattacgtaaaagtaaaagacaagaaaata 507  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||| |||||| | | ||| ||   ||| ||||||||||||||| |||||||||||    
T  8281796 gatgttccaacaccagacacacaaatatgaatgttgagtttaatgtttaaacatcgtgctaaccaaagcaaaatacgtaaaagtaaaacacaagaaaata 8281895  T
Q  508 aaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    |||||| || ||| |||||||| | |||||||||||||||||||||||||  | ||| ||||||||| ||||||||    
T  8281896 aaaggctcatgagaattgttaacctagttcggtgacaaacacacctactccggaggcgaccaagccaggaaggaaa 8281971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 12753020 - 12753116
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||||||||| | | ||||||| |||||||||||| ||||||||||||||| | ||||||||||||| |||| |||||||    
T  12753020 taaaagacaagaaagtaaaaggcacaacaagtttgttaacccagttcggtgagaaacacacctactctggaggctaccaagccaggaagtaaatcca 12753116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 484 - 586
Target Start/End: Complemental strand, 18390311 - 18390208
Alignment:
Q  484 gtaaaagtaaaagacaagaaaa-taaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaa 581  Q
    |||||||||||||| ||||||| |||| |||||| | |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||    
T  18390311 gtaaaagtaaaaga-aagaaaagtaaatggcacaggtgatttgttaacccagttcggtgacaaacacacctactctgggggctaccaagccagtaaggaa 18390213  T
Q  582 atcca 586  Q
    |||||    
T  18390212 atcca 18390208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 20859702 - 20859646
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  20859702 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 20859646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 486 - 586
Target Start/End: Complemental strand, 23478139 - 23478038
Alignment:
Q  486 aaaagtaaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||| |||| ||||||||| |||| ||||||  ||| ||||| | | ||||| |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  23478139 aaaaataaatgacaagaaagtaaatggcacagtgagtttgttgacctagttcagtgacaaacacacctactctgggggctaccaagccaggaaggaaatc 23478040  T
Q  585 ca 586  Q
    ||    
T  23478039 ca 23478038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 4246034 - 4246090
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  4246034 ccagttcggtgacaaacacacctactctgggggctaccaagacaggaaggaaatcca 4246090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 26972560 - 26972504
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  26972560 ccagttcggtgacaaacacacctactctgggggctaccaagccagtaaggaaatcca 26972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 17851530 - 17851476
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  17851530 agttcggtgacaaacacacctactctgggggctactaagccaagaaggaaatcca 17851476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 578
Target Start/End: Complemental strand, 41331001 - 41330913
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaag 578  Q
    |||| ||||||||  |||||||||||| ||| ||||| | |||||||||||||||||||||||||| | |||||||| |||||| ||||    
T  41331001 taaatgacaagaatgtaaaaggcacaaagagtttgttgacccagttcggtgacaaacacacctactttgggggctactaagccaggaag 41330913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 11668022 - 11667968
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11668022 ccagttcgatgagaaacacacctactctgggggctaccaagccaggaaggaaatc 11667968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 20841422 - 20841368
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||| |  |||||||||||||| ||||||||||||    
T  20841422 agttcggtgacaaacacacctactatatgggctaccaagccaggaaggaaatcca 20841368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 583
Target Start/End: Complemental strand, 15804278 - 15804217
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||| ||||||| |||||||||||||||||| | ||||||||||||||| |||| ||||    
T  15804278 ttgttaacccagttcagtgacaaacacacctactatgggggctaccaagccaggaagaaaat 15804217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 1973312 - 1973368
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||| |||||||| |||| ||||||| || ||||||||||||    
T  1973312 ccagttcggtgacaaacactcctactctgggggataccaagtcaggaaggaaatcca 1973368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 10340356 - 10340260
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||| |||| ||||||||||| | || ||||| | |||||||||| ||||  ||||||||||| |||||||| ||| || ||||||||||||    
T  10340356 taaaagacaggaaagtaaaaggcacagaaagtttgttgacccagttcggtaacaagtacacctactctgggggctactaagtcaggaaggaaatcca 10340260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 14745942 - 14745886
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||| |||| |||||||    
T  14745942 ccagctcggtgacaaacacaccaactctgggggctaccaagccaggaagaaaatcca 14745886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 564
Target Start/End: Complemental strand, 18379937 - 18379856
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggct 564  Q
    ||||||||||||||||  ||| |||  |||||| | |||| ||||| ||||||||||||||||||||||||| || ||||||    
T  18379937 gtaaaagtaaaagacagaaaagtaattggcacatgtgatttgttaacccagttcggtgacaaacacacctacactaggggct 18379856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 17012019 - 17012057
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  17012019 cacctactctgggggctaccaagccaggaaggaaatcca 17012057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Complemental strand, 45599471 - 45599433
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  45599471 cacctactctcggggctaccaagccaggaaggaaatcca 45599433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 17038207 - 17038301
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||  |||| || | ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| | ||||||||||    
T  17038207 taaaagacaagaaagtaaaaaacacaggaagtttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagcca-ggaggaaatcca 17038301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 33062377 - 33062440
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| |||||||||||||||  |||||||||||    
T  33062377 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccagaaaggaaatcca 33062440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 374 - 586
Target Start/End: Complemental strand, 16655656 - 16655443
Alignment:
Q  374 aattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaacaaa 473  Q
    |||||||||| || || |||||||| |||||||||||||||||||| ||||| |||||||| |||||| ||  |||||||||||||||| | | ||| ||    
T  16655656 aattctagcacgttagctttaagattttctatgcgatgttccaacatcagacacacaaataagaatgtagagtttaatgtttcaacatcgtgctaaccaa 16655557  T
Q  474 cataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagcc 572  Q
    |||||||| |  ||||||||||||||||||| ||||||||||| ||| |||||||| | ||||| | || ||||||||||||||| ||||||| ||||||    
T  16655556 cataaattcccaaaaagtaaaagacaagaaagtaaaaggcacaggagaattgttaacctagttcagcgataaacacacctactctaggggctaacaagcc 16655457  T
Q  573 atgaaggaaatcca 586  Q
    | ||||||||||||    
T  16655456 aagaaggaaatcca 16655443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 33737943 - 33738038
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||||||||| |  ||||||| |||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||    
T  33737943 taaaagacaagaaagtaaaaggcacaacaatttgttaacccagttcggtgacaaacacacctactatggaggctaccaagccaggaaggaaatcca 33738038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 490 - 586
Target Start/End: Complemental strand, 10198451 - 10198355
Alignment:
Q  490 gtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||| ||||  ||||| ||| |||||||| | ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  10198451 gtaaaagacaagaaagtaaagtgcacaggaggattgttaacctagttcggtgacaaacacacctactc-tagggctaccaagccaggaaggaaatcca 10198355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 10190885 - 10190941
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  10190885 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 10190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 586
Target Start/End: Original strand, 2679802 - 2679904
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    |||||||||||||||| |||| ||||| |||||| ||||| ||||| ||||| |||||||||||||||||||||| ||||| ||||||  | ||||||||    
T  2679802 gtaaaagtaaaagaca-gaaagtaaaaagcacaaaagatttgttaacccagtacggtgacaaacacacctactctgggggcaaccaagttaggaaggaaa 2679900  T
Q  583 tcca 586  Q
    ||||    
T  2679901 tcca 2679904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 586
Target Start/End: Original strand, 41785291 - 41785489
Alignment:
Q  392 ttaagatgttctatgcgatgttccaacaccagacgcaca-aatatgaatgttgaacttaatgtttcaacatcataccaacaaacataaattacgtaa--a 488  Q
    |||||||||||||||||||||| ||||||||  | |||| || ||| ||||||   | |||||| ||||||||| | |||||| |  ||||||| ||  |    
T  41785291 ttaagatgttctatgcgatgtttcaacaccaagcacacagaaaatggatgttgcgttcaatgttccaacatcatgctaacaaataataattacgcaagaa 41785390  T
Q  489 agtaaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    | |||| ||||||||| ||||| ||| | |||| ||||| | ||||||| ||||||||||||| ||||   ||||||||||||||| ||||||||||||    
T  41785391 aataaatgacaagaaagtaaaatgcatagagagtttgttgacccagttctgtgacaaacacacatactacgggggctaccaagccaagaaggaaatcca 41785489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 15700472 - 15700415
Alignment:
Q  530 ccagttcggtgacaaacacacctactctt-ggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  15700472 ccagttcggtgacaaacacacctactcttgggggctaccaagccaggaaggaaatcca 15700415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 9068904 - 9069000
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||| |||  | | ||||||| |||||||||| ||||||||||||||||| | ||||||||||| | ||||||||||||    
T  9068904 taaaagacaagaaagtaaaaggaacatcaagtttgttaacccagttcggtaacaaacacacctactctggaggctaccaagcgaggaaggaaatcca 9069000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 13399464 - 13399408
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  13399464 ccagttcggtgacaaacacacctactctaggggctaccaagccaggaagaaaatcca 13399408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 518 - 586
Target Start/End: Original strand, 16383877 - 16383945
Alignment:
Q  518 gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||| | | |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  16383877 gagattgttgacctagttcggtgacaaacacacctactctgggggcttccaagccaggaaggaaatcca 16383945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 32861638 - 32861702
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||    
T  32861638 ttgttgatccagttcggtgacaaacacacctactctaggggctaccaagtcaggaagaaaatcca 32861702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 33745922 - 33746018
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||||||||| | | |||||||  ||||||||||||||| ||||||||| | | ||||||||||| | ||||||||||||    
T  33745922 taaaagacaagaaagtaaaaggcacaacaagtttgttaacacagttcggtgacaaaaacacctactatggaggctaccaagctaggaaggaaatcca 33746018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 19659398 - 19659493
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||||||| ||  || || | ||| ||||||||||||||||||||  || ||||| ||||||||| ||||||||||||    
T  19659398 taaaagacaagaaattaaaaggcacaggaagttattgacccaattcggtgacaaacacacctaagctgggggccaccaagccaggaaggaaatcca 19659493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 486 - 586
Target Start/End: Original strand, 28019258 - 28019359
Alignment:
Q  486 aaaagtaaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    ||||||||| |||| |||| ||||   ||||| ||| ||||| | ||||||||||||||||||||| | |||| ||||||||||||||| ||||||||||    
T  28019258 aaaagtaaatgacaggaaagtaaataacacaatgagtttgttgacccagttcggtgacaaacacacatgctctgggggctaccaagccaagaaggaaatc 28019357  T
Q  585 ca 586  Q
    ||    
T  28019358 ca 28019359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 53326179 - 53326118
Alignment:
Q  258 gcatatattgttataagttggtaatatggtaaatgtgtataatttgttta-aattgttgtta 318  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  53326179 gcatatattattaaaagttggtaatgtggtaaatgtgtataatttgtttataattgttgtta 53326118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 33899149 - 33899093
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||| |||||||    
T  33899149 ccagttcggtgacaaacacacctactctaggggctaccaagtcaggaagaaaatcca 33899093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 18618272 - 18618221
Alignment:
Q  535 tcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  18618272 tcggtgacaaacatacctactctgggggctaccaagccaggaaggaaatcca 18618221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 25116822 - 25116880
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggct--accaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||    
T  25116822 ccagttcggtgacaaacacacctactctgggggctacaccaagccaggaaggaaatcca 25116880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 15162646 - 15162592
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||    
T  15162646 agttcggtgacaaacacacctactctgggggctgccaacccaagaaggaaatcca 15162592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 586
Target Start/End: Complemental strand, 46741934 - 46741854
Alignment:
Q  506 taaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| ||| ||||||| ||| ||||||| |||   |||||||||| ||||||||||||||||||||||||||||    
T  46741934 taaaaggcacaatgagtttgttaacccatttcggtg-caacgtcacctactctgggggctaccaagccatgaaggaaatcca 46741854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 50907842 - 50907906
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||  |||||||||||||||||||||||||||  ||||||||||| || |||| |||||||    
T  50907842 ttgttaactcagttcggtgacaaacacacctactctgagggctaccaagtcaggaagaaaatcca 50907906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 10724260 - 10724311
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||| | |||||||| |||||| |||||||||    
T  10724260 agttcggtgacaaacacacctactttgggggctacaaagccaggaaggaaat 10724311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 10938029 - 10938080
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||| | |||||||| |||||| |||||||||    
T  10938029 agttcggtgacaaacacacctactttgggggctacaaagccaggaaggaaat 10938080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 25354803 - 25354740
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| ||||||||||||    
T  25354803 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccaggaaggaaatcca 25354740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 567
Target Start/End: Complemental strand, 26245033 - 26244988
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctacc 567  Q
    ||||||| |||||||||||| ||||||||||||||| | |||||||    
T  26245033 ttgttaacccagttcggtgaaaaacacacctactctggaggctacc 26244988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 23541235 - 23541298
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| | ||||||||||||| ||||||||||||    
T  23541235 ttgttaacccagttcggtg-caacgtcacctactctggaggctaccaagccaggaaggaaatcca 23541298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 371 - 586
Target Start/End: Complemental strand, 23802115 - 23801911
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||||||| || |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||             
T  23802115 tgaaattctagcacgttagttttaagatgttttgtgcgatgttccaacaccagacacacaaatatgaatgttgaacttactgtttcaacat--------- 23802025  T
Q  471 aaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaa 569  Q
       || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |||||||| ||||   |||||||||||    
T  23802024 ---cacaaattacgtaaaagtaaaagacaagaaaataaaaggcataagagaatcgttaacccagttcggtgagaaacacacatacttggggggctaccaa 23801928  T
Q  570 gccatgaaggaaatcca 586  Q
    || | ||| ||||||||    
T  23801927 gcaaggaatgaaatcca 23801911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 583
Target Start/End: Original strand, 27106738 - 27106930
Alignment:
Q  395 agatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaacaaacataaa-----ttacgtaaaa 489  Q
    |||||||||||||||||||||||||| |||  || ||| | |||||||||| ||||||||| |||||  | | |||||  |||||     ||| ||||||    
T  27106738 agatgttctatgcgatgttccaacactagaaaca-aaagacgaatgttgaatttaatgtttaaacattgtgctaacaataataaacagaattaggtaaaa 27106836  T
Q  490 gtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||||||||||| |||| |||||||| | |||||||| | |||||||||||||| |||||||||| ||| ||||||||| || |||||||||    
T  27106837 gtaaaagacaagaaagtaaatggcacaagtgcattgttaacctagttcggtgacaaatacacctactc-tggagctaccaaggcaagaaggaaat 27106930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 586
Target Start/End: Original strand, 31587334 - 31587530
Alignment:
Q  395 agatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttc-aacatcataccaacaaacataaattacgtaa-----a 488  Q
    |||||||||||| |||||||||||||||||  || ||||| ||||||||||  ||||||||  |||||||| | |||| | |||||| |  |||     |    
T  31587334 agatgttctatgtgatgttccaacaccagataca-aaatacgaatgttgaatgtaatgtttagaacatcatgctaacagaaataaataaaataatgaaaa 31587432  T
Q  489 agtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
     ||||||||||||||| ||||| ||| | ||| |||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  31587433 cgtaaaagacaagaaagtaaaaagcataggaggattgttaacccagttcggtgacaaacacacctactc-tggagctaccaagccaggaaggaaatcca 31587530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 392 - 585
Target Start/End: Complemental strand, 21250500 - 21250302
Alignment:
Q  392 ttaagatgttctatgcgatgttccaacaccagacgcaca-aatatgaatgttgaacttaatgtttcaacatcataccaacaaacataaattacgtaa--a 488  Q
    ||||||||||||||| ||| |||||||||||  | |||| || |  |||||||   |||||||| ||||||||| | |||||||||||| |||  ||  |    
T  21250500 ttaagatgttctatgagatattccaacaccaaccacacagaaaactaatgttgtgtttaatgttccaacatcatgcaaacaaacataaaatacacaagta 21250401  T
Q  489 agtaaaagacaagaaaataaaaggcaca-agagattgtt-aatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcc 585  Q
    | |||| ||||||||| |||||||||||  ||| ||||| |  |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||    
T  21250400 aataaatgacaagaaagtaaaaggcacagtgagtttgttgaccccagttcggtgacaaacacacctactctgggggctaccaagctaggaaggaaatcc 21250302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 484 - 586
Target Start/End: Original strand, 27111032 - 27111134
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    ||||||||| |||||||||||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||     
T  27111032 gtaaaagtagaagacaagaaaataaatggcgcaagtgaattgttaacccagatcggtgacaaacacacctactc-tggggctaccaagccaggaaggaag 27111130  T
Q  583 tcca 586  Q
    ||||    
T  27111131 tcca 27111134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 486 - 586
Target Start/End: Original strand, 21530339 - 21530440
Alignment:
Q  486 aaaagtaaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||| |||| ||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  21530339 aaaaataaatgacaagaaagtaaatggcacaacgagtttgtttatccagttcggtgacaaacatgcctactctaggggctaccaagccaagaaggaaatc 21530438  T
Q  585 ca 586  Q
    ||    
T  21530439 ca 21530440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 36398955 - 36398899
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36398955 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 36398899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 525 - 586
Target Start/End: Complemental strand, 19466688 - 19466627
Alignment:
Q  525 ttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  19466688 ttaacccagttcggtgataaacacacctactctgggggctaccaagccaggaaggaaatcca 19466627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 12910488 - 12910544
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  12910488 ccagttcggtgacaaacatacctactctgggggctaccaagccaggaaggaaatcca 12910544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 23758624 - 23758680
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||    
T  23758624 ccagttcggtgacaaacacaactactctgggggctaccaagccaggaaggaaatcca 23758680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 24790319 - 24790263
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  24790319 ccagttcggtgacaaacacacctactctgggggctaccaagtcaggaaggaaatcca 24790263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 586
Target Start/End: Complemental strand, 19198485 - 19198383
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    ||||||||||||||||||||| |||| | |||| | | |||||||| |  ||| |||||||||||||||||||| |||||||| ||||||| ||||||||    
T  19198485 gtaaaagtaaaagacaagaaagtaaatgccacatgtgaattgttaaccttgtttggtgacaaacacacctactc-tggggctatcaagccaggaaggaaa 19198387  T
Q  583 tcca 586  Q
    ||||    
T  19198386 tcca 19198383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 522 - 584
Target Start/End: Complemental strand, 24283697 - 24283635
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||| || ||||||||||    
T  24283697 ttgttaattcagttcggtgacaaacacacctattctgggggctaccaagtcaggaaggaaatc 24283635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 12952463 - 12952527
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||||||||||||||||||||||||| | | |||||||||| || ||||||||||||    
T  12952463 ttgttaacccagttcggtgacaaacacacctactatggaggctaccaagtcaggaaggaaatcca 12952527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 20649725 - 20649661
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||| ||| || ||||||||||||    
T  20649725 ttgttaacccagttcggggacaaacacacctactctaggggctacaaagtcaggaaggaaatcca 20649661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 484 - 582
Target Start/End: Original strand, 25347149 - 25347244
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    ||||||||||||||||||||| |||| |||||||| || |   || | || | ||||||||||||||||||||| |||||||||||||||  |||||||    
T  25347149 gtaaaagtaaaagacaagaaagtaaatggcacaagtgaat---aaccaaggttggtgacaaacacacctactctgggggctaccaagccagaaaggaaa 25347244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 24317979 - 24317914
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctac-tcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||| ||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||    
T  24317979 ttgttaacccaattcggtgacaaacacacctacatctgggggttaccaagccaggaaggaaatcca 24317914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 18765667 - 18765730
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| ||||||||||||    
T  18765667 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccaggaaggaaatcca 18765730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 549 - 587
Target Start/End: Original strand, 15328326 - 15328364
Alignment:
Q  549 acctactcttggggctaccaagccatgaaggaaatccat 587  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  15328326 acctactctgggggctaccaagccaagaaggaaatccat 15328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 29565850 - 29565902
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccag 423  Q
    ||||||||||||| || ||  |||||||||| || ||||||||||||||||||    
T  29565850 tgaaattctagcacgttagacttaagatgttttacgcgatgttccaacaccag 29565902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 391 - 578
Target Start/End: Complemental strand, 20765293 - 20765106
Alignment:
Q  391 tttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaacaaacataaattacgtaaaag 490  Q
    ||||||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||| |||||| ||| | | ||| |||| ||||||||||||||    
T  20765293 tttaagatgttctgtgtaatgttccaaaaccagacgaacaaatatgagtgttgaacttaatatttcaatatcgtgctaactaacacaaattacgtaaaag 20765194  T
Q  491 taaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaag 578  Q
     ||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||| |||||| ||||| ||||||||| ||||    
T  20765193 aaaaagacaagaaaat-aaaggcacaagagaatggttaacccagttcggtgacaaacacacttactctgggggcgaccaagccaggaag 20765106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 587
Target Start/End: Original strand, 30424893 - 30424991
Alignment:
Q  490 gtaaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatccat 587  Q
    ||||||||||||||| |||||  |||| || ||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  30424893 gtaaaagacaagaaagtaaaatacacaggaagattgttgaaccagttcggtgacaaacacacctactctaggggctaccaagccaagaaggaaatccat 30424991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 24501783 - 24501879
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||| | | | ||||||| |||||||||||||||||||||||||||| | |||||||||||||  |||||||||||    
T  24501783 taaaagacaagaaaataaaaggcacgacaagtttgttaacccagttcggtgacaaacacacctactctagaggctaccaagccagaaaggaaatcca 24501879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 586
Target Start/End: Complemental strand, 18152928 - 18152810
Alignment:
Q  468 aacaaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctac 566  Q
    |||||||| |||||| ||||||||| ||||||||||| |||| ||||||   || ||||||| ||||||| |||||||||||||||||| | | ||||||    
T  18152928 aacaaaca-aaattaggtaaaagtacaagacaagaaagtaaatggcacagctgaattgttaacccagttcagtgacaaacacacctactatggaggctac 18152830  T
Q  567 caagccatgaaggaaatcca 586  Q
    |||| || ||||||||||||    
T  18152829 caaggcaggaaggaaatcca 18152810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 13195324 - 13195378
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13195324 agttcgatgacaaacacacctactctaggggctaccaagccatgaaggaaatcca 13195378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 586
Target Start/End: Complemental strand, 26965796 - 26965675
Alignment:
Q  468 aacaaacataaattacgtaa--aagtaaaagacaagaaaataaaaggcacaag-agattgttaatccagttcggtgacaaacacacctactcttggggct 564  Q
    ||||||||||||||| | ||  || |||| ||||||||| ||||||||||||  || ||||| | |||||||||||||||||||||||||||| | ||||    
T  26965796 aacaaacataaattatgcaagaaaataaatgacaagaaagtaaaaggcacaaacagtttgttgacccagttcggtgacaaacacacctactctggaggct 26965697  T
Q  565 accaagccatgaaggaaatcca 586  Q
    | |||| || ||||||||||||    
T  26965696 atcaagtcaggaaggaaatcca 26965675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 9281877 - 9281813
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| ||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  9281877 ttgttgatctagttcggtgacaaacacacctactctgggggctaccaagcctggaaggaaatcca 9281813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 15897834 - 15897778
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  15897834 ccagttcggtgacaaacacacctactctgggggctaccaagctaggaaggaaatcca 15897778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 25782802 - 25782866
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||||||||  |||||||||||    
T  25782802 ttgttaacccagttcggtgacaaacacacctactctggaggctaccaagccagtaaggaaatcca 25782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 25805444 - 25805508
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  25805444 ttgttaaaccagatcggtgacaaacacacctactctagaggctaccaagccaggaaggaaatcca 25805508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 33665794 - 33665848
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  33665794 agttcggtgacaaacacacctactctgggggctactaagccaggaaggaaatcca 33665848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 17234590 - 17234646
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||| ||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  17234590 ccagtttggtgacaaacacacctactctaggggctaccaagcccagaaggaaatcca 17234646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 23882854 - 23882798
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||  || ||||||||||||    
T  23882854 ccagttcggtgacaaacacacctactctgggggctaccaaatcaggaaggaaatcca 23882798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 573
Target Start/End: Complemental strand, 17528053 - 17528002
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagcca 573  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  17528053 ttgttaacccagttcagtgacaaacacacctactattggggctaccaagcca 17528002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 14258909 - 14258965
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| ||||||||||||| | ||||||||||||| | ||||||||||||    
T  14258909 ccagttcggtgagaaacacacctactttgggggctaccaagcgaggaaggaaatcca 14258965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 17855193 - 17855249
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  17855193 ccagatcggtgacaaacacacctactctggaggctatcaagccaggaaggaaatcca 17855249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 20470363 - 20470307
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||| ||||| |||||||||||| | ||||||||||||| ||||||||||||    
T  20470363 ccagttcggcgacaatcacacctactctggaggctaccaagccaggaaggaaatcca 20470307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 20989925 - 20989869
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||  |||||||||||    
T  20989925 ccagttcggtgacagacacacctactctgggggctaccaagtcagaaaggaaatcca 20989869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 17864583 - 17864529
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||| |||| |||||| ||| |||| |||||||    
T  17864583 agttcggtgacaaacacacctactctgggggttaccaatccaggaagaaaatcca 17864529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 12444892 - 12444824
Alignment:
Q  517 agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||| ||||||||||||||| |||||||||||| | ||||||||||| | ||||||| ||||    
T  12444892 agagtttgttaacccagttcggtgacaa-cacacctactctggaggctaccaagctaggaaggaactcca 12444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 532 - 584
Target Start/End: Complemental strand, 12039840 - 12039788
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    ||||||||||| |||||||||||| | ||||||||||||| | ||||||||||    
T  12039840 agttcggtgacgaacacacctactttgggggctaccaagctaggaaggaaatc 12039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 573
Target Start/End: Complemental strand, 8465824 - 8465785
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagcca 573  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  8465824 ttcggtgacaaacacacctactctgggggctgccaagcca 8465785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 584
Target Start/End: Original strand, 11960472 - 11960534
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    ||||||| ||| ||| ||||||||||||||||| ||   ||||||||||||| ||||||||||    
T  11960472 ttgttaacccaattcagtgacaaacacacctaccctcaaggctaccaagccacgaaggaaatc 11960534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 564
Target Start/End: Complemental strand, 17869978 - 17869944
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggct 564  Q
    |||||||||||||||||||||||||||| ||||||    
T  17869978 ccagttcggtgacaaacacacctactctaggggct 17869944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 564
Target Start/End: Complemental strand, 17879730 - 17879696
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggct 564  Q
    |||||||||||||||||||||||||||| ||||||    
T  17879730 ccagttcggtgacaaacacacctactctaggggct 17879696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 15007503 - 15007441
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||||||| || ||||  |||||||||| |||| |||||||||||||||||||||||    
T  15007503 ttgttaacccagttcgatg-caaagtcacctactct-ggggataccaagccatgaaggaaatcca 15007441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 371 - 586
Target Start/End: Complemental strand, 10357 - 10140
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||||||| || ||||||  ||||||||| ||||||||||||||||||||| |||||   |||||||||||||||||||| |||||| ||   ||    
T  10357 tgaaattctagcacgttagttttt-gatgttctaagcgatgttccaacaccagacgtacaaaagcgaatgttgaacttaatgtttaaacatcgtaaagac 10259  T
Q  471 aaacataa-attacgtaaaagtaaaagacaagaaaa-taaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctacc 567  Q
     |||| || | |||||||||| |||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||| |||| ||||||||||||||||    
T  10258 taacacaataatacgtaaaagcaaaagacaagaaaaataaaaggcacaggagaattgttaacccagttcggtgacaaatacacttactcttggggctacc 10159  T
Q  568 aagccatgaaggaaatcca 586  Q
    ||| ||  |||||||||||    
T  10158 aagtcagaaaggaaatcca 10140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 371 - 584
Target Start/End: Complemental strand, 23580273 - 23580059
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||||||| || ||||| |||||||||||| |||||||||||||  ||||  |||||   |||||||||||||||||||| |||||| ||   ||    
T  23580273 tgaaattctagcacgttagttt-aagatgttctattcgatgttccaacattagacaaacaaaagcgaatgttgaacttaatgtttaaacatcgtaattac 23580175  T
Q  471 aaacataaattacgtaaaagtaaaagacaagaaaa-taaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctacca 568  Q
     |||| ||| ||||||||||||||||||||||||| ||||||||| | |||| ||||||| ||||||||||||| |||||||||||| | |||| |||||    
T  23580174 taacacaaaatacgtaaaagtaaaagacaagaaaaataaaaggcataggagaattgttaacccagttcggtgactaacacacctactatgggggttacca 23580075  T
Q  569 agccatgaaggaaatc 584  Q
    ||||| ||||||||||    
T  23580074 agccaagaaggaaatc 23580059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 444 - 571
Target Start/End: Original strand, 23296412 - 23296540
Alignment:
Q  444 aacttaatgtttcaacatcataccaacaaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagag-attgttaatccagttcggtgac 542  Q
    ||||||||||||||||||| | | ||| |||| ||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||    
T  23296412 aacttaatgtttcaacatcgtgctaactaacacaaattacataaaagtaaaagacaagaaaataaaatgcacaatagaattgttaatccagttcggtgac 23296511  T
Q  543 aaacacacctactcttggggctaccaagc 571  Q
    ||||||||||||| | | |||||||||||    
T  23296512 aaacacacctactttggaggctaccaagc 23296540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 484 - 584
Target Start/End: Complemental strand, 20597030 - 20596930
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    |||||||||||||||| |||| ||||||||||||| |||| ||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  20597030 gtaaaagtaaaagaca-gaaagtaaaaggcacaagtgatttgttaaccgagttcggtgacaaacacacctactctgggggctaccaagccaagaaggaaa 20596932  T
Q  583 tc 584  Q
    ||    
T  20596931 tc 20596930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 388 - 586
Target Start/End: Original strand, 24901961 - 24902161
Alignment:
Q  388 agttttaagatgttctatgcgatgttccaacaccagacgcacaaatatga-atgttgaacttaatgtttcaacatcataccaacaaacataaattacgta 486  Q
    |||||||||||||||||||||||||||||||||||||  || | | |  | ||||||   |||||||| |||| | || | |||||||||||  || | |    
T  24901961 agttttaagatgttctatgcgatgttccaacaccagaaccaaagaaaacagatgttgcgtttaatgttccaacgttatgctaacaaacataagatatgca 24902060  T
Q  487 a--aagtaaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |  ||||||| ||||||||| ||||||||||| ||| ||||| | ||||||| |||||||||||||||| | | ||||||||||||||| ||||||||||    
T  24902061 agaaagtaaatgacaagaaagtaaaaggcaca-gagtttgttgacccagttcagtgacaaacacacctattataggggctaccaagccaggaaggaaatc 24902159  T
Q  585 ca 586  Q
    ||    
T  24902160 ca 24902161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 586
Target Start/End: Complemental strand, 26133156 - 26133018
Alignment:
Q  447 ttaatgtttcaacatcataccaacaaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaa 545  Q
    |||||||||||||||||| | ||||||  ||||  ||  |||| |||| ||||||||| |||||| ||||| ||| ||||||| ||||||||||||||||    
T  26133156 ttaatgtttcaacatcatgcaaacaaa--taaaacacagaaaaataaatgacaagaaagtaaaagacacaatgagtttgttaacccagttcggtgacaaa 26133059  T
Q  546 cacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
     ||||||||||| ||||||| ||||||| ||||||||||||    
T  26133058 gacacctactctgggggctatcaagccaggaaggaaatcca 26133018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 10251390 - 10251493
Alignment:
Q  482 acgtaaaagtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaagga 580  Q
    ||||||||||||||||||| | | ||||| ||||| |||| ||||||| |||||||||||| ||||||||||||||| | ||||||||||||| ||||||    
T  10251390 acgtaaaagtaaaagacaatagagtaaaatgcacaggagaattgttaacccagttcggtgataaacacacctactctggaggctaccaagccaggaagga 10251489  T
Q  581 aatc 584  Q
    ||||    
T  10251490 aatc 10251493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 487 - 584
Target Start/End: Original strand, 14926602 - 14926700
Alignment:
Q  487 aaagtaaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||| ||||||||| |||| ||||||| | | ||||||| |||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  14926602 aaagtaaatgacaagaaattaaatggcacaacaagtttgttaacccagtttggtgacagacacacctactctgggggctaccaagccaagaaggaaatc 14926700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 487 - 584
Target Start/End: Original strand, 15350068 - 15350166
Alignment:
Q  487 aaagtaaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||| ||||||||| |||| ||||||| | | ||||||| |||||| ||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  15350068 aaagtaaatgacaagaaattaaatggcacaacaagtttgttaacccagtttggtgacagacacacctactctgggggctaccaagccaagaaggaaatc 15350166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 521 - 586
Target Start/End: Original strand, 7508425 - 7508490
Alignment:
Q  521 attgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  7508425 attgttaacccagttcgatgacaaacacacctacttttggggctaccaagccaggaaggaaatcca 7508490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 10658342 - 10658438
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||||| |||||||||||  | | ||||||| ||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  10658342 taaaagagaagaaagtaaaaggcacagcaagtttgttaacccagttccgtgacaaacacacctactctggaggctaccaagccaggaaggaaatcca 10658438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 20991541 - 20991597
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  20991541 ccagttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 20991597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 31269222 - 31269158
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  31269222 ttgttaacccagttcggtgacaaactcacctactccgggggctaccaagccatgaaggaaatcca 31269158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 522 - 583
Target Start/End: Original strand, 23057197 - 23057258
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  23057197 ttgttaacccagttcggtgacaaacacacctactctgagggctaccaagccaggaaggaaat 23057258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 532 - 584
Target Start/End: Original strand, 4458740 - 4458792
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  4458740 agttcggtgacaaacacacctactctgggggctaccaagccaggaaggaaatc 4458792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 23956836 - 23956932
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||||||| |||| ||||| | | |||||||||||||||||| ||||| | | ||||||||||||| |||| |||||||    
T  23956836 taaaagacaagaaagtaaaaggcacagagagtttgttgacctagttcggtgacaaacacatctactttagaggctaccaagccaggaagaaaatcca 23956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 42636206 - 42636302
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaaga-gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| |||||||||||  | | ||||||| | |||||||||||||||| ||||||||| | ||||||||||| | ||||||||||||    
T  42636206 taaaagacaagaaagtaaaaggcacatcaagtttgttaaccaagttcggtgacaaacatacctactctggaggctaccaagcaaggaaggaaatcca 42636302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 496 - 586
Target Start/End: Complemental strand, 7586724 - 7586634
Alignment:
Q  496 gacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||| ||||||||||| | |  ||||| | |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  7586724 gacaagaaagtaaaaggcacagacaatttgttgacccagttcggtgacaaacatacctactct-ggggctaccaagccaggaaggaaatcca 7586634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 586
Target Start/End: Original strand, 19353069 - 19353185
Alignment:
Q  468 aacaaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctac 566  Q
    ||||||||||| ||| ||||||||||| ||||||||| |||| |||||| | || ||||||| |||||||| |||||| ||||||||||||  |||||||    
T  19353069 aacaaacataa-ttaggtaaaagtaaa-gacaagaaagtaaatggcacaggtgaattgttaacccagttcgatgacaa-cacacctactctgagggctac 19353165  T
Q  567 caagccatgaaggaaatcca 586  Q
     |||||| ||||||||||||    
T  19353166 taagccaagaaggaaatcca 19353185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 530 - 584
Target Start/End: Complemental strand, 11521570 - 11521516
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatc 584  Q
    |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  11521570 ccagtttggtgacaaacacacctactctaggggctaccaagccaggaaggaaatc 11521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 645124 - 645188
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||| |||||||||||||||||| | |||||||| |||||| ||||||||||||    
T  645124 ttgttaacccagttcagtgacaaacacacctactatgggggctacgaagccaggaaggaaatcca 645188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 11588463 - 11588519
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  11588463 ccagctcggtgacaaacacacctactctagcggctaccaagccaggaaggaaatcca 11588519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 16208037 - 16207985
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||    
T  16208037 ttcggcgacaaacacacctactctgggggctaccaagccaggaaggaaatcca 16207985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 522 - 569
Target Start/End: Original strand, 21260506 - 21260553
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaa 569  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  21260506 ttgttgatccagttcggtgacaaacacacctactctgggggctaccaa 21260553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 586
Target Start/End: Complemental strand, 23082972 - 23082877
Alignment:
Q  493 aaagacaagaaaa-taaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| ||||||| ||||| |||||||| | ||||||| |||||| ||||| |||||||||||||||  ||||||||||| || ||||||||||||    
T  23082972 aaagaaaagaaaagtaaaatgcacaagacaattgttaacccagtttggtgagaaacacacctactctacgggctaccaagtcaggaaggaaatcca 23082877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 557
Target Start/End: Complemental strand, 10038916 - 10038867
Alignment:
Q  509 aaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactct 557  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  10038916 aaggcacaagagaattgttaacccagttcggtgacaaacacacctactct 10038867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 2076497 - 2076560
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||||||||||||||||    
T  2076497 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccatgaaggaaatcca 2076560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 2082916 - 2082979
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||||||||||||||||    
T  2082916 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccatgaaggaaatcca 2082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 500 - 586
Target Start/End: Original strand, 6045288 - 6045375
Alignment:
Q  500 agaaaataaaa-ggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| ||||||||||| ||||| | | |||||||||| |||||| |||||||| ||||||||||||||| |||| |||||||    
T  6045288 agaaaataaaatggcacaagagaattgtttacctagttcggtgaaaaacacgcctactct-ggggctaccaagccaggaagaaaatcca 6045375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 586
Target Start/End: Original strand, 9564216 - 9564310
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||   |||||||||| |||||||| |||||| | ||||||||||    
T  9564216 taaaagacaagaaagtaaaaggcacagagagtttgttaacccagttcggtg-caacgtcacctactctgggggctacaaagcca-ggaggaaatcca 9564310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 526 - 586
Target Start/End: Complemental strand, 9894230 - 9894170
Alignment:
Q  526 taatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||  |||||||||||    
T  9894230 taatccagtttggtgacaaacacacctactctggggactaccaagtcagtaaggaaatcca 9894170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 10309649 - 10309593
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||||||| ||||    
T  10309649 ccagttcagtgacaaacgcacctactctgggggctaccaagccaagaaggaagtcca 10309593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 16436777 - 16436829
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||| | ||||||||||||| | ||||||||||||    
T  16436777 ttcggtgacaaacacacctactatgggggctaccaagcaaggaaggaaatcca 16436829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 10279816 - 10279866
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  10279816 agttcggcgacaaacacacctactc-tggggctaccaagccaggaaggaaat 10279866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 581
Target Start/End: Complemental strand, 11407117 - 11407058
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaa 581  Q
    ||||||| |||||| | ||||||||||||||||||| |||||||||| |||| |||||||    
T  11407117 ttgttaacccagttagatgacaaacacacctactctgggggctaccatgccaggaaggaa 11407058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 583
Target Start/End: Original strand, 14687322 - 14687419
Alignment:
Q  485 taaaagtaaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||| |||| |||  ||||| ||| | ||| ||||||| | |||||||||||||||||||||||| | | ||||||||||| | |||||||||    
T  14687322 taaaagtaaaggacatgaag-taaaatgcataggaggttgttaacctagttcggtgacaaacacacctactatggaggctaccaagctaggaaggaaat 14687419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 586
Target Start/End: Original strand, 14984642 - 14984726
Alignment:
Q  502 aaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||| |||||| |||| ||||||| ||||||||||| |||   |||||||||| ||||||| ||||||| ||||||||||||    
T  14984642 aaaataaatggcacatagagtttgttaacccagttcggtg-caacgtcacctactctgggggctatcaagccaggaaggaaatcca 14984726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 502 - 586
Target Start/End: Original strand, 15414253 - 15414337
Alignment:
Q  502 aaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||| |||||| |||| ||||||| ||||||||||| |||   |||||||||| ||||||| ||||||| ||||||||||||    
T  15414253 aaaataaatggcacatagagtttgttaacccagttcggtg-caacgtcacctactctgggggctatcaagccaggaaggaaatcca 15414337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 584
Target Start/End: Complemental strand, 20588912 - 20588813
Alignment:
Q  484 gtaaaagtaaaagacaagaaaataaaaggcacaagagatt-gttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaa 582  Q
    |||||||||||||||| |||| ||||| |||||   |||| |||||  ||||||||||||||||| || |||| | ||||||||||||||| ||||||||    
T  20588912 gtaaaagtaaaagaca-gaaagtaaaatgcacagatgatttgttaactcagttcggtgacaaacaaac-tactttgggggctaccaagccaggaaggaaa 20588815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 4548070 - 4548019
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacacca 422  Q
    ||||||||| ||| || ||| ||||||||||||||| |||||||||||||||    
T  4548070 tgaaattctggcacgttagtcttaagatgttctatgtgatgttccaacacca 4548019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 586
Target Start/End: Complemental strand, 29546280 - 29546241
Alignment:
Q  547 acacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  29546280 acacctactctcggggctaccaagccaggaaggaaatcca 29546241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Complemental strand, 48797760 - 48797722
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  48797760 cacctactctgggggctaccaagccaggaaggaaatcca 48797722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 23393737 - 23393696
Alignment:
Q  391 tttaagatgttctatgcgatgttccaacaccagacgcacaaa 432  Q
    ||||| |||||| ||| |||||||||||||||||||||||||    
T  23393737 tttaaaatgttcaatgtgatgttccaacaccagacgcacaaa 23393696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 24049372 - 24049425
Alignment:
Q  370 atgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccag 423  Q
    |||||||||| ||| || ||  |||||||||||||||| |||||||||||||||    
T  24049372 atgaaattctcgcacgttagacttaagatgttctatgcaatgttccaacaccag 24049425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 4794787 - 4794693
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||| ||||| |||| || |||| ||||||| ||| |||   |||||||||| ||||||||||||||| | ||||||||||    
T  4794787 taaaagacaagaaattaaaaagcacagagagttttttaacccagttcagtg-caacgtcacctactctgggggctaccaagcca-ggaggaaatcca 4794693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 425
Target Start/End: Complemental strand, 4794886 - 4794858
Alignment:
Q  397 atgttctatgcgatgttccaacaccagac 425  Q
    |||||||||||||||||||||||||||||    
T  4794886 atgttctatgcgatgttccaacaccagac 4794858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 14165156 - 14165220
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| |||||||||||||||||||||||||     |||||||||  ||||| ||||||||||||    
T  14165156 ttgttgatccagttcggtgacaaacacacctttgtctggggctacatagccaggaaggaaatcca 14165220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 42782747 - 42782810
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| |||| |||||||    
T  42782747 ttgttaacccagttcggtg-caatgtcacctactctgggggctaccaagccaggaagaaaatcca 42782810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 371 - 517
Target Start/End: Original strand, 25668209 - 25668355
Alignment:
Q  371 tgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacaccagacgcacaaatatgaatgttgaacttaatgtttcaacatcataccaac 470  Q
    ||||||||||||| || ||||||||||| |||||  |||||||||||||| ||||| ||||||| |||||||||  ||||||||| |||||| | | |||    
T  25668209 tgaaattctagcacgttagttttaagatattctaaacgatgttccaacactagacgtacaaatacgaatgttgagtttaatgtttaaacatcgtgctaac 25668308  T
Q  471 aaacataaattacgtaaaagtaaaagacaagaaaataaaaggcacaa 517  Q
     || ||||| |||||||||||||| ||||||||||||||||||||||    
T  25668309 taaaataaaatacgtaaaagtaaaggacaagaaaataaaaggcacaa 25668355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 13942198 - 13942102
Alignment:
Q  491 taaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| ||||||||| |||| |||||| |||| ||||||| | |||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  13942198 taaatgacaagaaagtaaatggcacatgagagttgttaacctagttcggtgacaaacacacctactctgggggctaccaagtcaggaaggaaatcca 13942102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 490 - 586
Target Start/End: Original strand, 24117553 - 24117650
Alignment:
Q  490 gtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| ||| ||| |||||||  ||| ||||||| ||||||||||||||||||| |||||||| | ||||||||||||| ||| ||||||||    
T  24117553 gtaaaagacaaaaaagtaacaggcacagaagaattgttaacccagttcggtgacaaacacgcctactctggtggctaccaagccaggaatgaaatcca 24117650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 13338583 - 13338646
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  13338583 ttgttaacccagttcggtgacaaacacacatactc-tggggctaccaagccaggaaggaaatcca 13338646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 18221101 - 18221165
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||| |||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||    
T  18221101 ttgttgatccagttcggtgacaaacacacctactttggggtctaccaagccaagaaggaaatcca 18221165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 22404922 - 22404866
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  22404922 ccagttcggtgacaaacacacctgctctaggggctaccaagccaggaaggaaatcca 22404866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 30605851 - 30605795
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  30605851 ccagttcggtgacaaacacacctactctgggggctaccaatccaggaaggaaatcca 30605795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 583
Target Start/End: Complemental strand, 17661615 - 17661518
Alignment:
Q  485 taaaagtaaaagacaagaaaataaaaggcacaagagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||| |||| |||  ||||| ||| | ||| ||||||| |||||||||||||||||||||||||| | ||||||||||||||  |||||||||    
T  17661615 taaaagtaaaggacatgaag-taaaatgcataggagtttgttaacccagttcggtgacaaacacacctactatgggggctaccaagcctggaaggaaat 17661518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 26036809 - 26036865
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||    
T  26036809 ccagttcggtggaaaacacacctactctgggggctaccaagccaggaaggaaatcca 26036865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 13735130 - 13735077
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatccat 587  Q
    |||||||||||||||||||||||| |||| ||||||| || |||||||||||||    
T  13735130 ttcggtgacaaacacacctactctgggggttaccaagtcaggaaggaaatccat 13735077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 586
Target Start/End: Complemental strand, 17920972 - 17920888
Alignment:
Q  502 aaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||  ||| ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| ||||||||||||    
T  17920972 aaaataaaaggcacagtgagtttgttaacccagttcggtg-caacgtcacctactctaggggctaccaagccaggaaggaaatcca 17920888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 22131033 - 22130939
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||| ||||| ||||| |||| ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| | ||||||||||    
T  22131033 taaaagacaagaaagtaaaaagcacagagagtttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagcca-ggaggaaatcca 22130939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 23420722 - 23420666
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||| |||||||||||  |||||||||||| | ||||||||||||    
T  23420722 ccagttcggtgacaaatacacctactctaagggctaccaagctaggaaggaaatcca 23420666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 26329374 - 26329318
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||| |||||||||||||||  | |||||||||||| ||||||||||||    
T  26329374 ccagttcggtgataaacacacctactctgtgagctaccaagccaggaaggaaatcca 26329318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 520 - 571
Target Start/End: Original strand, 22979734 - 22979784
Alignment:
Q  520 gattgttaatccagttcggtgacaaacacacctactcttggggctaccaagc 571  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  22979734 gattgttaacccagttcggtgacaaacacacctact-atggggctaccaagc 22979784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 24189863 - 24189914
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||||||||||||||| |||||| ||||||||||||||  |||||||||    
T  24189863 agttcggtgacaaacacacatactctgggggctaccaagccgggaaggaaat 24189914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 20714895 - 20714841
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||||  ||||||||||| || | ||||||||||    
T  20714895 agttcggtgacaaacacacctactctgagggctaccaagtcaggtaggaaatcca 20714841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 11204713 - 11204776
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| ||||||||||||    
T  11204713 ttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccaggaaggaaatcca 11204776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 20845994 - 20845899
Alignment:
Q  491 taaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||| |||| |||| ||||||||||| |||| ||||||| ||||||||||| |||   |||||||| | |||||||||||| || ||||||||||||    
T  20845994 taaatgacaggaaagtaaaaggcacacagagtttgttaacccagttcggtg-caacgtcacctactatgggggctaccaagtcaggaaggaaatcca 20845899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 23623880 - 23623932
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||| |||||||| || | | ||||||||||||    
T  23623880 ttcggtgacaaacacacctactctgggggctactaacctaggaaggaaatcca 23623932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 25105581 - 25105525
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||| | ||||||| || |||||||||||| || ||||||||||||    
T  25105581 ccagttcggtgacaagcgcacctacactaggggctaccaagtcaggaaggaaatcca 25105525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 25164674 - 25164618
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||| | ||||||| || |||||||||||| || ||||||||||||    
T  25164674 ccagttcggtgacaagcgcacctacactaggggctaccaagtcaggaaggaaatcca 25164618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 587
Target Start/End: Complemental strand, 22184801 - 22184701
Alignment:
Q  487 aaagtaaaagacaagaaaataaaaggcaca-agagattgttaatccagttcggtgacaaacacacctac-tcttggggctaccaagccatgaaggaaatc 584  Q
    |||||||| ||||||||| |||| |||||| |||| ||||||  |||||||||  |||| | ||||||| ||| ||||||||||||||| ||||||||||    
T  22184801 aaagtaaatgacaagaaagtaaacggcacagagagtttgttatcccagttcggc-acaa-ctcacctacatctaggggctaccaagccaggaaggaaatc 22184704  T
Q  585 cat 587  Q
    |||    
T  22184703 cat 22184701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 583
Target Start/End: Complemental strand, 26183407 - 26183342
Alignment:
Q  517 agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||| ||||||| ||||||||||| |||   |||||||||| ||||||||||||||| |||||||||    
T  26183407 agagtttgttaacccagttcggtg-caacgtcacctactctgggggctaccaagccaggaaggaaat 26183342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 7898082 - 7898019
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||||||| |||   |||||||||| | ||||||||||||| ||||||||||||    
T  7898082 ttgttaacccagttcggtg-caacgtcacctactctggaggctaccaagccaggaaggaaatcca 7898019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 522 - 583
Target Start/End: Original strand, 13598 - 13659
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  13598 ttgttaatccagttcggtgacaaacacacctactctaggggctaccaagccaggaagaaaat 13659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 490 - 564
Target Start/End: Original strand, 5376 - 5451
Alignment:
Q  490 gtaaaagacaagaaaataaaaggcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggct 564  Q
    |||||||| |||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  5376 gtaaaagataagaaagtaaatggcacaagagaattgttaacccagttcggtgacaaacacacctactctaggggct 5451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 25834 - 25778
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  25834 ccagttcggtgacaaacacacctactctgggagctaccaagccaggaaggaaatcca 25778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 37004 - 37060
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  37004 ccagttcggtgacaaacacacctactctggaggctaccaagccaggaaggaaatcca 37060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 50252 - 50196
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  50252 ccagttcggtgacaaacacacctactctaggggctaccaagtcaggaaggaaatcca 50196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 586
Target Start/End: Complemental strand, 61677 - 61578
Alignment:
Q  487 aaagtaaaagacaagaaaataaaaggcacaa-gagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcc 585  Q
    |||||||| |||| |||| ||||  |||||| ||| ||||| | ||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||    
T  61677 aaagtaaatgacaggaaagtaaatagcacaatgagtttgttgacccagttcggtgacaaacacat-tactctgggggctaccaagccaagaaggaaatcc 61579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 3114 - 3177
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||    
T  3114 ttgttaatccagttcggtgacaa-cacacctactctggaggctaccaagccaggaaggaaatcca 3177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 532 - 583
Target Start/End: Complemental strand, 7698 - 7647
Alignment:
Q  532 agttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaat 583  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  7698 agttcggtgacaaacacacttactctaggggctaccaagccaggaaggaaat 7647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 18285 - 18230
Alignment:
Q  532 agttcggtgacaaacacacctactct-tggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||    
T  18285 agttcggtgacaaacacacctactctggggggctacgaagccaagaaggaaatcca 18230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 532 - 586
Target Start/End: Complemental strand, 27679 - 27624
Alignment:
Q  532 agttcggtgacaaacacacctactct-tggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||    
T  27679 agttcggtgacaaacacacctactctggggggctacgaagccaagaaggaaatcca 27624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 586
Target Start/End: Complemental strand, 16784 - 16729
Alignment:
Q  531 cagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||||||||  |||||||||||||||  |||||||||||    
T  16784 cagttcggtgacaaacacacctactccgggggctaccaagccagaaaggaaatcca 16729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 586
Target Start/End: Original strand, 202375 - 202450
Alignment:
Q  512 gcacaagaga-ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||| |||||||| |||||||||||  |||||| |||||||||||| || ||||||||||||    
T  202375 gcacaagagagttgttaacccagttcgttgacaaacacaagtactctgggggctaccaagtcaggaaggaaatcca 202450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 586
Target Start/End: Original strand, 36273 - 36352
Alignment:
Q  507 aaaaggcaca-agagattgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| |||| ||||||||||||||||||| |||   |||||||||| ||||||||||||||| |||| |||||||    
T  36273 aaaaggcacagagagtttgttaatccagttcggtg-caacgtcacctactctgggggctaccaagccaggaagaaaatcca 36352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 420
Target Start/End: Original strand, 36133 - 36184
Alignment:
Q  369 tatgaaattctagcaagtaagttttaagatgttctatgcgatgttccaacac 420  Q
    |||||||||||| || |||||| |||| ||||||| ||||||||||||||||    
T  36133 tatgaaattctaacacgtaagtcttaaaatgttctctgcgatgttccaacac 36184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 26407 - 26459
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||||| | ||||||||||||| | ||||||||||||    
T  26407 ttcggtgacaaacacacctactatgggggctaccaagcaaggaaggaaatcca 26459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 18566 - 18604
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  18566 cacctacttttggggctaccaagccatgaaggaaatcca 18604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 36598 - 36647
Alignment:
Q  537 ggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||||||||||||| | ||||||||||| | ||||||||||||    
T  36598 ggtgacaaacacacctactctggaggctaccaagctaggaaggaaatcca 36647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 110418 - 110361
Alignment:
Q  530 ccagttcggtgacaaa-cacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||| ||||| |||||| |||||||||||| || ||||||||||||    
T  110418 ccagttcggtgacaaaacacacatactctaggggctaccaagtcaggaaggaaatcca 110361  T

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Target: scaffold0333 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 5645 - 5700
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| ||||||||||||||| | |||||||||||| | ||||||||||||    
T  5645 ccagttcggtgtcaaacacacctactc-tagggctaccaagcaaggaaggaaatcca 5700  T

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Target: scaffold0259 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 586
Target Start/End: Complemental strand, 17430 - 17382
Alignment:
Q  538 gtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||||||||||||| |||||||||||| || |||| |||||||    
T  17430 gtgacaaacacacctactctgggggctaccaagtcaggaagaaaatcca 17382  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 37357 - 37420
Alignment:
Q  522 ttgttaatccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| |||||||||||||| ||||||| |||  ||||||||||||| || ||||||||||||    
T  37357 ttgttaacccagttcggtgacagacacacccact-atggggctaccaagtcaggaaggaaatcca 37420  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 586
Target Start/End: Original strand, 40334 - 40389
Alignment:
Q  530 ccagttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| | ||||||||||||    
T  40334 ccagttcagtgacaa-cacacctactctgggggctaccaagctaggaaggaaatcca 40389  T

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Target: scaffold0032 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 103122 - 103160
Alignment:
Q  548 cacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  103122 cacctactctaggggctaccaagccaggaaggaaatcca 103160  T

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Target: scaffold0185 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 534 - 586
Target Start/End: Complemental strand, 2515 - 2463
Alignment:
Q  534 ttcggtgacaaacacacctactcttggggctaccaagccatgaaggaaatcca 586  Q
    ||||||||||| |||||||||| | ||||||| ||||||| ||||||| ||||    
T  2515 ttcggtgacaagcacacctactttaggggctatcaagccaggaaggaagtcca 2463  T

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