View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12322_low_11 (Length: 244)
Name: NF12322_low_11
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12322_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28874046 - 28874283
Alignment:
| Q |
1 |
cattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttcttaaatattatgtttagatttatagatgtgtgtcaata |
100 |
Q |
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| T |
28874046 |
cattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttcttaaatattatgtttagatttatagatgtgtgtcaata |
28874145 |
T |
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| Q |
101 |
ttatgtttagatttataaaagagacagttgatacacaacattaatatatgtaatgtgatactgtgnnnnnnncttaaacgcggttgttgctaaatttatt |
200 |
Q |
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| T |
28874146 |
ttatgtttagatttataaaagagacagttgatacacaacattaatatatgtaatgtgatactgtgtttttttcttaaacgcggttgttgctaaatttatt |
28874245 |
T |
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| Q |
201 |
ctttcaacgatcatctctccaagtgttacacaggttct |
238 |
Q |
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| T |
28874246 |
ctttcaacgatcatctctccaagtgttacacaggttct |
28874283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28858705 - 28858777
Alignment:
| Q |
1 |
cattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttcttaaatattat |
73 |
Q |
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| T |
28858705 |
cattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtgccttcttaaatattat |
28858777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 28843240 - 28843330
Alignment:
| Q |
82 |
ttatagatgtgtgtcaatattatgtttagatttataaaagag-------acagttgatacacaacattaatatatgtaatgtgatactgtg |
165 |
Q |
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| T |
28843240 |
ttatagatgtgttttaatattatgtttagatttataaaagaggtacttaacagttgatacacagcattgatatgtgtgaagtgatactgtg |
28843330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 28858810 - 28858882
Alignment:
| Q |
124 |
acagttgatacacaacattaatatatgtaatgtgatactgtgnnnnnnncttaaacgcggttgttgctaaatt |
196 |
Q |
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| T |
28858810 |
acagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacgcggttgctgctaaatt |
28858882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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