View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12322_low_12 (Length: 240)

Name: NF12322_low_12
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12322_low_12
NF12322_low_12
[»] chr1 (12 HSPs)
chr1 (22-199)||(9026162-9026340)
chr1 (85-216)||(7015921-7016053)
chr1 (85-216)||(17063197-17063329)
chr1 (86-197)||(51043001-51043113)
chr1 (104-216)||(28033880-28033993)
chr1 (84-216)||(41463886-41464019)
chr1 (85-218)||(10556272-10556405)
chr1 (85-218)||(13362713-13362843)
chr1 (118-216)||(16299877-16299976)
chr1 (85-215)||(17064050-17064180)
chr1 (106-161)||(36632876-36632932)
chr1 (105-139)||(36632969-36633003)
[»] chr8 (3 HSPs)
chr8 (85-216)||(44251224-44251356)
chr8 (85-216)||(3234667-3234799)
chr8 (113-216)||(3813201-3813305)
[»] chr7 (1 HSPs)
chr7 (114-216)||(21142305-21142408)
[»] chr2 (6 HSPs)
chr2 (98-215)||(18318330-18318448)
chr2 (149-216)||(24857141-24857208)
chr2 (67-216)||(38623604-38623752)
chr2 (157-217)||(14832325-14832386)
chr2 (120-216)||(8441352-8441450)
chr2 (112-205)||(43305229-43305323)
[»] chr3 (7 HSPs)
chr3 (102-217)||(23308535-23308651)
chr3 (85-214)||(18365784-18365914)
chr3 (85-218)||(4549503-4549637)
chr3 (170-216)||(49319246-49319292)
chr3 (174-216)||(45073224-45073266)
chr3 (170-215)||(10746941-10746986)
chr3 (1-33)||(42755331-42755363)
[»] chr5 (4 HSPs)
chr5 (85-210)||(42078937-42079062)
chr5 (150-216)||(8927588-8927654)
chr5 (85-209)||(1422610-1422734)
chr5 (118-216)||(19264726-19264825)
[»] chr6 (2 HSPs)
chr6 (114-205)||(5583557-5583649)
chr6 (84-195)||(31636885-31636997)
[»] chr4 (9 HSPs)
chr4 (140-216)||(4875318-4875394)
chr4 (114-216)||(44341944-44342047)
chr4 (105-219)||(51875593-51875707)
chr4 (101-214)||(40184335-40184449)
chr4 (131-216)||(8177137-8177223)
chr4 (100-142)||(20281429-20281471)
chr4 (118-218)||(22306072-22306167)
chr4 (125-214)||(54512269-54512359)
chr4 (85-125)||(16821041-16821081)
[»] scaffold0034 (1 HSPs)
scaffold0034 (86-215)||(97026-97157)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 9026162 - 9026340
Alignment:
Q  22 tataatgttttgatttaatttgctttttacgaagggtaatgcaaggacactagttaatcaaagcaaaagagaaaactttaagtcaaaagatgaagcattt 121  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||  |||||||||||| |||||| |||||||||||||||||    
T  9026162 tataatgttttgatttaatttgctttttacgaagggtaatgctaggacacttgttaatgaagtcaaaagagaaaattttaagccaaaagatgaagcattt 9026261  T
Q  122 aatgcattgattacacaatttaaatataaatattacc-tttttagggttattatttaagtatttaatgcaaatattact 199  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  9026262 aatgcattgattacacaatttaaatgtaaatattaccttttttggggttattatttaagtatttaatgcaaatattact 9026340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 7015921 - 7016053
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaattta-aatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||| ||  |||||||| ||||| ||||||||||||||||||||||||||||||  |||  ||||||| ||||||| |||| |||||||||| |||    
T  7015921 caaaagaggaagttttaagtctaaagaggaagcatttaatgcattgattacacaattttgaatgcaaatatttcctttttggggtcattatttaagcatt 7016020  T
Q  184 taatgcaaatattactatatttaacttcttaac 216  Q
    |||||||||||||||||||||||||||||||||    
T  7016021 taatgcaaatattactatatttaacttcttaac 7016053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 17063329 - 17063197
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaattta-aatataaatattac-ctttttagggttattatttaagtat 182  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||  |||| ||  ||| |||||||||| ||| ||||| | |||||||||||||    
T  17063329 caaaagaggaaattttaagtcaaaagatgaagcatttaatgcattgattctacaacttcgaatgtaaatattactcttattagg-tcattatttaagtat 17063231  T
Q  183 ttaatgcaaatattactatatttaacttcttaac 216  Q
    ||||||||||||||||||||||||| ||||||||    
T  17063230 ttaatgcaaatattactatatttaatttcttaac 17063197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 51043113 - 51043001
Alignment:
Q  86 aaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtattt 184  Q
    ||||||| ||| |||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||||| ||||  |||||||||||||| ||||    
T  51043113 aaaagaggaaattttaagtcaaaagaggaagtatttaatgcattgattacacaactttgaatataaatattaccctttttaggttattatttaagcattt 51043014  T
Q  185 aatgcaaatatta 197  Q
    ||| |||||||||    
T  51043013 aattcaaatatta 51043001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 28033993 - 28033880
Alignment:
Q  104 tcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactata 202  Q
    |||||||| |||||||||||| |||||||||||||| |||||||  ||||||| |  |||| | || |||||||||| ||||||||||||||||||||||    
T  28033993 tcaaaagaggaagcatttaatacattgattacacaactttaaatgcaaatattgctctttttgagtcattatttaagcatttaatgcaaatattactata 28033894  T
Q  203 tttaacttcttaac 216  Q
    ||| ||||||||||    
T  28033893 tttgacttcttaac 28033880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 41463886 - 41464019
Alignment:
Q  84 gcaaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtat 182  Q
    ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||| || ||| |||  |||||||| | |||| || | |||||||||| |     
T  41463886 gcaaaagaggaaattttaagacaaaagataaagcatttaatgcattgattacataactttgaatgcaaatattatcctttttggatcattatttaagcag 41463985  T
Q  183 ttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||  ||||||||| |||||||||||||||||    
T  41463986 ttaatataaatattacgatatttaacttcttaac 41464019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 10556272 - 10556405
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||  ||| |||||||||||||| ||||||||||||| |||| || || || ||| |||  | || ||||| |||| |||| |||||| ||| |||    
T  10556272 caaaagaagaaattttaagtcaaaagaggaagcatttaatgtattggttgcataactttgaatgcagat-ttacccttttggggtcattattcaagcatt 10556370  T
Q  184 taatgcaaatattactatatttaacttcttaacta 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  10556371 taatgcaaatattactatatttgacttcttaacta 10556405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 13362713 - 13362843
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    ||||||||||||||||||   | |||| ||||| | ||||||||| ||||||||| ||| ||| ||||||||| | |||| | ||  ||||||||  |||    
T  13362713 caaaagagaaaactttaa---acaagaggaagcgtgtaatgcattaattacacaactttgaatgtaaatattatcctttt-gagtcgttatttaaacatt 13362808  T
Q  184 taatgcaaatattactatatttaacttcttaacta 218  Q
    |||||||||||||| ||||||| ||||||||||||    
T  13362809 taatgcaaatattattatatttgacttcttaacta 13362843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 16299877 - 16299976
Alignment:
Q  118 atttaatgcattgattacacaattta-aatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    ||||||| |||||||||||||||||  |||  | |||||||| |||| |||| |||||||||| |||||||||||||||||||  |||| ||||| ||||    
T  16299877 atttaattcattgattacacaattttgaatgcagatattaccctttttgggtaattatttaagcatttaatgcaaatattacttaatttgacttcctaac 16299976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 17064050 - 17064180
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatatta-cctttttagggttattatttaagtat 182  Q
    |||||||  ||| |||||| |||||||  ||  ||||||||||||||||||  || |||||||  |||||||| |||||||  | | |||||||||| ||    
T  17064050 caaaagaagaaattttaagccaaaagaaaaaatatttaatgcattgattactaaactttaaatgcaaatattatccttttt--gatcattatttaagcat 17064147  T
Q  183 ttaatgcaaatattactatatttaacttcttaa 215  Q
    ||||| |||||||||||||| ||||||||||||    
T  17064148 ttaattcaaatattactatagttaacttcttaa 17064180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 36632876 - 36632932
Alignment:
Q  106 aaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattaccttt 161  Q
    |||||||||| ||||||||||||||||||||||| ||| |||  |||||||||||||    
T  36632876 aaaagatgaatcatttaatgcattgattacacaactttgaatgcaaatattaccttt 36632932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 36633003 - 36632969
Alignment:
Q  105 caaaagatgaagcatttaatgcattgattacacaa 139  Q
    ||||||| |||||||||||||||||||||||||||    
T  36633003 caaaagaggaagcatttaatgcattgattacacaa 36632969  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 44251356 - 44251224
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||| ||| |||| ||||||||  ||||| |||| |||||||||| |||    
T  44251356 caaaagagaaaattttaagccaaaagaggaaacatttaatgcattgattacacaactttgaatacaaatattatattttttgggtcattatttaagcatt 44251257  T
Q  184 taatgcaaatattactatatttaacttcttaac 216  Q
    ||||| |||| ||||||||||| | ||||||||    
T  44251256 taatgtaaatgttactatatttgaattcttaac 44251224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 3234667 - 3234799
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||| |||||||||| |||| || ||||| |||||| |||||||||||||| ||| |||  |||||||||| |||| |  | |||||| |||  ||    
T  3234667 caaaagaggaaactttaagccaaatgaagaagcctttaattcattgattacacaattttgaatgcaaatattaccctttttgaatcattattaaagcgtt 3234766  T
Q  184 taatgcaaatattactatatttaacttcttaac 216  Q
    |||||||||||||| ||||||| ||||||||||    
T  3234767 taatgcaaatattattatatttgacttcttaac 3234799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 3813305 - 3813201
Alignment:
Q  113 gaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttc 211  Q
    |||||||||| | |||||||||||||| ||| |||  |||||||||| ||||    | ||||||||||||||||||||||||||||| ||||||||||||    
T  3813305 gaagcatttattacattgattacacaactttgaatgcaaatattaccattttttaatcattatttaagtatttaatgcaaatattacaatatttaacttc 3813206  T
Q  212 ttaac 216  Q
    |||||    
T  3813205 ttaac 3813201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 21142408 - 21142305
Alignment:
Q  114 aagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttct 212  Q
    ||||||||||||||||||| |||| | ||| ||| |||||||||||||||| || | |||||||||||||||||||||||||||| |||||||||||| |    
T  21142408 aagcatttaatgcattgatcacactactttgaatgtaaatattacctttttcggatgattatttaagtatttaatgcaaatattattatatttaactttt 21142309  T
Q  213 taac 216  Q
    ||||    
T  21142308 taac 21142305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 18318330 - 18318448
Alignment:
Q  98 tttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatatt 196  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||| |||  |||||||||  |||| |||| |||||||||| ||||||| ||||||||    
T  18318330 tttaagccaaaagataaagcatttaatgcattgattacacaactttgaatgcaaatattactctttttgggtaattatttaagcatttaatacaaatatt 18318429  T
Q  197 actatatttaacttcttaa 215  Q
    ||||||||| |||| ||||    
T  18318430 actatatttgactttttaa 18318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 24857141 - 24857208
Alignment:
Q  149 aaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    ||||||||| ||||| |  | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24857141 aaatattactttttttgaatcattatttaagtatttaatgcaaatattactatatttgacttcttaac 24857208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 38623752 - 38623604
Alignment:
Q  67 gacactagttaatcaaagcaaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttag 165  Q
    ||||||||||||  ||  |||||||| ||| |||||| ||||| |  ||||||||||| |||||||||||||| |||||||  |||||||| | |||| |    
T  38623752 gacactagttaaagaagccaaaagaggaaattttaagccaaaa-agaaagcatttaattcattgattacacaactttaaatgcaaatattatcctttttg 38623654  T
Q  166 ggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
     || || ||||||  ||||||||||||||||| ||||||| ||||||||||    
T  38623653 agtaat-atttaaacatttaatgcaaatattattatatttgacttcttaac 38623604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 14832325 - 14832386
Alignment:
Q  157 cctttttagggttattatttaagtattt-aatgcaaatattactatatttaacttcttaact 217  Q
    ||||||| ||||||||||||||| |||| |||||| |||||||||||||| |||||||||||    
T  14832325 ccttttttgggttattatttaagcattttaatgcacatattactatatttgacttcttaact 14832386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 8441450 - 8441352
Alignment:
Q  120 ttaatgcattgattacacaa--tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||| |||||||||||||  ||| |||  ||||||||||  |||   || |||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  8441450 ttaatgtattgattacacaacttttgaatgcaaatattacccatttgaagtcattatttaagcatttaatacaaatattactatatttgacttcttaac 8441352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 43305323 - 43305229
Alignment:
Q  112 tgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatattt 205  Q
    ||||| |||||||||||||||||||||| |||||||  |||||||| | |||| | ||   |||||||  ||||||||||||||||| |||||||    
T  43305323 tgaagtatttaatgcattgattacacaactttaaatgcaaatattatcctttttgtgtcggtatttaaacatttaatgcaaatattattatattt 43305229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 23308651 - 23308535
Alignment:
Q  102 agtcaaaagatgaagcatttaatgcattgattacacaattta-aatataaatattacctttttagggttattatttaagtatttaatgcaaatattacta 200  Q
    |||||||||| |||| |||||||||||||||||||||||||  ||| |||||||||  |||||  | | |||||||||||||||||| ||||||||| ||    
T  23308651 agtcaaaagaggaagtatttaatgcattgattacacaattttgaatgtaaatattatattttttagataattatttaagtatttaatacaaatattatta 23308552  T
Q  201 tatttaacttcttaact 217  Q
    ||||| |||||||||||    
T  23308551 tatttgacttcttaact 23308535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 18365784 - 18365914
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||| ||| ||||||||||||||  |||| ||||||||||| |||||| || ||| ||  ||||||||||| ||||  | |||||||||||| |||    
T  18365784 caaaagaggaaaatttaagtcaaaagagaaagcttttaatgcatttattacataactttgaaggtaaatattaccctttttagattattatttaagcatt 18365883  T
Q  184 taatgcaaatattactatatttaacttctta 214  Q
    |||||||||||||||||||| | ||||||||    
T  18365884 taatgcaaatattactatatatgacttctta 18365914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 4549503 - 4549637
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||||||| ||||||  ||||||  ||| ||| |||||||| || |||||| ||| |||  |||||||| | |||| |||| ||||||||||  ||    
T  4549503 caaaagagaaaattttaagctaaaagagaaagtattcaatgcattaataacacaactttgaatgcaaatattaacctttttgggtcattatttaagcgtt 4549602  T
Q  184 taatgcaaatattactatatttaacttcttaacta 218  Q
    |||||||||||||||||||||| ||||||||||||    
T  4549603 taatgcaaatattactatatttgacttcttaacta 4549637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 49319292 - 49319246
Alignment:
Q  170 attatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||    
T  49319292 attatttaagtatttaatacaaatattactatatttgacttattaac 49319246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 45073266 - 45073224
Alignment:
Q  174 tttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||    
T  45073266 tttaagcatttaatacaaatattattatatttaacttcttaac 45073224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 10746941 - 10746986
Alignment:
Q  170 attatttaagtatttaatgcaaatattactatatttaacttcttaa 215  Q
    |||||||||| ||||||| |||| |||||||||||| |||||||||    
T  10746941 attatttaagcatttaattcaaaaattactatatttgacttcttaa 10746986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42755363 - 42755331
Alignment:
Q  1 tataattagggacggaggtagtataatgttttg 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42755363 tataattagggacggaggtagtattatgttttg 42755331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 42078937 - 42079062
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaatttaaatataaatattacctttttagggttattatttaagtattt 184  Q
    |||||||  ||| ||||||  ||||||  |||||||||||||||| |||||| ||||| |||  | ||||||||||||| || | |||||||||||||||    
T  42078937 caaaagaagaaattttaagataaaagagaaagcatttaatgcatttattacataatttgaatgcatatattaccttttttggatcattatttaagtattt 42079036  T
Q  185 aatgcaaatattactatatttaactt 210  Q
    ||||||||||||| ||||||| ||||    
T  42079037 aatgcaaatattattatatttgactt 42079062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 8927654 - 8927588
Alignment:
Q  150 aatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    ||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  8927654 aatattaccctttttgggtcattatttaagcatttaatgcaaatattactatatttgacttcttaac 8927588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 1422734 - 1422610
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatt 183  Q
    |||||||||| | |||||| |||||||  ||||||| |||||||||||||  ||| ||| |||  ||||||||||||| | |||  |||||||||| |||    
T  1422734 caaaagagaagattttaagccaaaagagtaagcattcaatgcattgattatccaactttgaatgcaaatattacctttgttgggccattatttaagcatt 1422635  T
Q  184 taatgcaaatattactatatttaact 209  Q
    ||||||||||| ||||||||||||||    
T  1422634 taatgcaaata-tactatatttaact 1422610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 19264726 - 19264825
Alignment:
Q  118 atttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||||||||||||||  ||| ||| |||  ||| |||||| |||| | || |||||||||| |||||||| |||||||||||||||||||||||||||    
T  19264726 atttaatgcattgattatccaactttgaatgcaaacattaccatttttgagtcattatttaagcatttaatgtaaatattactatatttaacttcttaac 19264825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 5583649 - 5583557
Alignment:
Q  114 aagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatattt 205  Q
    |||||||||||||||||||||||||| ||| | |  ||||||||| |||||  |||||||||||||  |||||||||||||||||||||||||    
T  5583649 aagcatttaatgcattgattacacaactttgattgcaaatattacattttttaggttattatttaaacatttaatgcaaatattactatattt 5583557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 31636885 - 31636997
Alignment:
Q  84 gcaaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtat 182  Q
    ||||||||| | | |||||  |||||||  ||| |||||||| ||| ||||||||| |||||||  ||||||||||||||   ||||||||||| | |||    
T  31636885 gcaaaagaggacattttaaaccaaaagaaaaagtatttaatgtattaattacacaactttaaatgcaaatattaccttttgtaggttattattttaatat 31636984  T
Q  183 ttaatgcaaatat 195  Q
    |||||||||||||    
T  31636985 ttaatgcaaatat 31636997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 4875318 - 4875394
Alignment:
Q  140 tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    ||||||| ||||||||||| |||| || |||||||||||| ||||||||||||||||| ||||||| | ||||||||    
T  4875318 tttaaatgtaaatattaccctttttggattattatttaagcatttaatgcaaatattattatatttgatttcttaac 4875394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 44342047 - 44341944
Alignment:
Q  114 aagcatttaatgcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttct 212  Q
    |||||||||||| ||||| | ||||| ||| ||| ||||||||||| |||| ||   |||||||||| ||||||||||||||| ||||||||| ||||||    
T  44342047 aagcatttaatgtattgaatgcacaactttgaatgtaaatattaccctttttggaccattatttaagcatttaatgcaaatatgactatatttgacttct 44341948  T
Q  213 taac 216  Q
    ||||    
T  44341947 taac 44341944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 51875593 - 51875707
Alignment:
Q  105 caaaagatgaagcatttaatgcattgattacacaatttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatt 204  Q
    |||||||| || ||||||||| ||||||||||||| || |||  |||||||| | |||| || | |||||||||  |||||| | ||||| || ||||||    
T  51875593 caaaagattaatcatttaatgtattgattacacaacttgaatgcaaatattatcctttttggatcattatttaaacatttaacgtaaatagtattatatt 51875692  T
Q  205 taacttcttaactaa 219  Q
    |||||||||||||||    
T  51875693 taacttcttaactaa 51875707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 40184335 - 40184449
Alignment:
Q  101 aagtcaaaagatgaagcatttaatgcattgattacacaa-tttaaatataaatatta-cctttttagggttattatttaagtatttaatgcaaatattac 198  Q
    ||||||||||| |||  |||||||||| ||||||||||| ||| |||| | |||||| |||||||| | |||||||||||| |||||||| |||||||||    
T  40184335 aagtcaaaagaagaaatatttaatgcaatgattacacaactttgaatacatatattatcctttttaag-ttattatttaagcatttaatgtaaatattac 40184433  T
Q  199 tatatttaacttctta 214  Q
     |||||| | ||||||    
T  40184434 catatttgagttctta 40184449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 8177223 - 8177137
Alignment:
Q  131 attacacaattt-aaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaac 216  Q
    |||||||||||| ||||  ||||||||||||||| |||| |||| ||||| |||||||  |||||||| ||||||| ||||||||||    
T  8177223 attacacaattttaaatgcaaatattacctttttcgggtcattaattaagcatttaatataaatattattatatttgacttcttaac 8177137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 20281429 - 20281471
Alignment:
Q  100 taagtcaaaagatgaagcatttaatgcattgattacacaattt 142  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  20281429 taagtcaaaagatgaaacatttaatgcattgattacacaattt 20281471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 22306072 - 22306167
Alignment:
Q  118 atttaatgcattgattacacaatttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttcttaact 217  Q
    |||||||||||||||| || | ||| ||| ||||||||||  ||||||    || ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  22306072 atttaatgcattgatttca-actttgaatgtaaatattactcttttag----atcatttaagtatttaatgcaaatgttactatatttgacttattaact 22306166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 54512269 - 54512359
Alignment:
Q  125 gcattgattacacaa-tttaaatataaatattacctttttagggttattatttaagtatttaatgcaaatattactatatttaacttctta 214  Q
    ||||||||||||||| ||| ||| |||| |||||| ||||  ||| || ||||||  ||||||| ||||||||||||||||| ||||||||    
T  54512269 gcattgattacacaactttgaatgtaaacattaccctttttaggtcataatttaaacatttaatacaaatattactatatttgacttctta 54512359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 16821081 - 16821041
Alignment:
Q  85 caaaagagaaaactttaagtcaaaagatgaagcatttaatg 125  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  16821081 caaaaaagaaaattttaagtcaaaagatgaagcatttaatg 16821041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 97157 - 97026
Alignment:
Q  86 aaaagagaaaactttaagtcaaaagatgaagcatttaatgcattgattacac-aatttaaatataaatatta-cctttttagggttattatttaagtatt 183  Q
    ||||||||||| ||||||| ||||||  || ||||||||||||||||||||| ||| | ||| ||||||||| | |||||    | |||||||||  |||    
T  97157 aaaagagaaaattttaagttaaaagagaaaacatttaatgcattgattacactaatattaatgtaaatattatcattttttttatcattatttaaacatt 97058  T
Q  184 taatgcaaatattactatatttaacttcttaa 215  Q
    |||||||||||||||||||||| ||| |||||    
T  97057 taatgcaaatattactatatttgactgcttaa 97026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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