View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12322_low_5 (Length: 346)
Name: NF12322_low_5
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12322_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 21215130 - 21214813
Alignment:
| Q |
12 |
agagacgacaactggatacatgacatgatatattaccatttcacattcatatgtcatacttccgccggagatacacatgtctcgaggccacttgatagga |
111 |
Q |
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| T |
21215130 |
agagacgacaactggatacatgacatgatatattaccatttcacattcatatgtcatacttccgccggagatacacatgtctcgaggccacttgacagga |
21215031 |
T |
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| Q |
112 |
ggcccttgataagcttgatgttaaggagcatggggaccgctaacacgtagacataagcaatttgttaaggtacatcatagaacatgtcaaaactatcatg |
211 |
Q |
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| T |
21215030 |
ggcccttgataagcttgatgttaaggagcatggggaccgctaacacgtagacataagcaatttgttaaggtacatcagagaacatgtcaaaactatcatg |
21214931 |
T |
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| Q |
212 |
ggtgatggtaaggtggagcagggaaatccaaattggccgagtttgcaacaaattctgaatgagttttaggaagagatgatctatagacgtaggcgtaggg |
311 |
Q |
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| T |
21214930 |
ggtgatggtaaggtggagcagggaaaccaaaattggtcgagtttgcaacaaattctgaatgagttttaggaagagatgatctatagacataggcgtaggg |
21214831 |
T |
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| Q |
312 |
gtagccatgctacccaat |
329 |
Q |
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| T |
21214830 |
gtagccatgctacccaat |
21214813 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 22271465 - 22271511
Alignment:
| Q |
24 |
tggatacatgacatgatatattaccatttcacattcatatgtcatac |
70 |
Q |
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| T |
22271465 |
tggatacatgagataatatattatcatgtcacattcatatgtcatac |
22271511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 18060267 - 18060324
Alignment:
| Q |
23 |
ctggatacatgacatgatatattaccatttcacattcatatgtcatacttccgccgga |
80 |
Q |
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||||||| || | ||||||||||||||||||| || |||||||||||| ||| ||||| |
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| T |
18060267 |
ctggataaattatatgatatattaccatttcaaatccatatgtcatacctccaccgga |
18060324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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