View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12322_low_6 (Length: 325)
Name: NF12322_low_6
Description: NF12322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12322_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 42570213 - 42570508
Alignment:
| Q |
11 |
cagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtcc |
110 |
Q |
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| T |
42570213 |
cagacagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgcgtcc |
42570312 |
T |
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| Q |
111 |
atgatctatggnnnnnnnccctctat-cttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgt |
209 |
Q |
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| T |
42570313 |
atgatctatagaaaaaaaccctctattcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaaggtgt |
42570412 |
T |
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| Q |
210 |
atcgaattttttatctctaattccggttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatccta |
305 |
Q |
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| T |
42570413 |
atcgaattttttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatccta |
42570508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 42577398 - 42577694
Alignment:
| Q |
7 |
ggagcagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgc |
106 |
Q |
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| T |
42577398 |
ggagcagacagtgtatatcattgagcgatatggaaagtactttaaaactcttcctaccggcgtccattttttgatcccttttgttgataaaattgcttgc |
42577497 |
T |
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| Q |
107 |
gtccatgatctatggnnnnnnnccctctatcttgatcgcctgcctgctttcaccaaggataacatcagcatgttcgtgggtggttgcattgatgttaagg |
206 |
Q |
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| T |
42577498 |
gtccataagctatggatagaaactcttaaacttaatagccagagtgctttcaccaacgataacattggcatgttcgtagatggtcggattgatgttaagg |
42577597 |
T |
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| Q |
207 |
tgtatcgaattttttatctctaattccggttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatccta |
305 |
Q |
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| T |
42577598 |
tctatcga--tttttgtctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatccta |
42577694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 42594084 - 42594189
Alignment:
| Q |
7 |
ggagcagagagtatatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgctcgc |
106 |
Q |
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| T |
42594084 |
ggagcagacagtatatattgttgagagattcggaaaatacttcaagactctacctacaggcgtccattttttgaatccttttgtcgatgaagttgttcgc |
42594183 |
T |
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| Q |
107 |
gtccat |
112 |
Q |
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|||||| |
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| T |
42594184 |
gtccat |
42594189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 42572825 - 42572877
Alignment:
| Q |
253 |
cttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatccta |
305 |
Q |
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| T |
42572825 |
cttgttggtttgtttagtaactgtttttactggagtgcagattgtggatccta |
42572877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 42572577 - 42572661
Alignment:
| Q |
19 |
atatatcatcgagagatatggaaaatactttaaatctcttcctaccggcatccattttttgaacccttttgttgataaaattgct |
103 |
Q |
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| T |
42572577 |
atatatcattgagcgatatggaaaatactttaaaactcttcccgccagctctctttttttgaatccttttctcgataaaattgct |
42572661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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