View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12323_high_1 (Length: 498)
Name: NF12323_high_1
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12323_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 7205480 - 7205022
Alignment:
| Q |
17 |
atgatattatctttatataacatgtgtctgatcaactttgtcttatgggtgctgtcgctgatccctaccttttttcattgccattaaagaattcaccatg |
116 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7205480 |
atgatattatctttatataacatgtgcccgatcaactttgtcttatgggtgctgtcgctgatacctaccttttttcattgccattaaagaattcaccatg |
7205381 |
T |
|
| Q |
117 |
ttcctaacaacaagtgttattaacagaacagacaaagtggttgtcttcttggtccttgtaagtctttgtaaattgtatgtgtcaatggaacaagttggca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7205380 |
ttcctaacaacaagtgttattaacagaacagacaaagtggttgtcttcttggtccttgtaagtctttgtaaattgtatgtgtcaatggaacaagttggca |
7205281 |
T |
|
| Q |
217 |
accacgcataattgtgttaaaaccagcaactatttcattattgagctgtcatattttatgtatatatgttctaaccagcaaggacaagtcaaatttcagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
7205280 |
accacgcataattgtgttaaaaccagcaactatttcattattgagctgtcatattttatgtatatattttctaaccagcaaagacaagtcaaatttcagt |
7205181 |
T |
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| Q |
317 |
tctataatcatataaaaacaaaaagttctattaatatatatgc----catgtatgggcattataatagtatacactttttacctactccttgatcattat |
412 |
Q |
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|||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7205180 |
tctataatcatataaa---------ttctattaatatgtatgccatgcatggatgggcattataatagtatacactttttacctactccttgatcattat |
7205090 |
T |
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| Q |
413 |
attcttcccattggttatgcacaatcaaaatagtcattgcaactgtaacgtccgagatgatgaggacg |
480 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7205089 |
atttttcccattggttatgcacaatcaaaatagtcattgcaactgtaacgtccgagctgatgaggacg |
7205022 |
T |
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