View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12323_high_2 (Length: 435)
Name: NF12323_high_2
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12323_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 14615841 - 14615421
Alignment:
| Q |
1 |
atacatatccttcatagtgcatcaccatggtatttataataatgtggaccaacatatttgagcaagttaacggcatatcaggtggtttttctcataatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||| |
|
|
| T |
14615841 |
atacatatccttcatagtgcatcaccagggtatttataataatgtggaccaacatatttgagcaagttaatggcacatcgttttttttttctcataatgc |
14615742 |
T |
|
| Q |
101 |
tttataaatagagaaggcttatcgcacaatgtggaattggctacatgaatcaaacaacctcataatgtctcctatagttgttttcgggctttctctacgt |
200 |
Q |
| |
|
||||||||| ||||||||||||| ||||| | ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||| |||| | |
|
|
| T |
14615741 |
tttataaattgagaaggcttatcccacaaggcggaattggctacatgaatcgaacaacatcataatgtctcctataggtgttttcggtcttctgctacct |
14615642 |
T |
|
| Q |
201 |
ctagtgactggactatccttcatctgatttactatccttactagggaaatttatttttgaagtagatagagaaaaccgtattatgatctatgccaaacaa |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14615641 |
ctagtgattggactatccttcatctgatttactatccttactagggaaatttatttttgaagcagatagagaaaaccgtattatgatctatgccaaacaa |
14615542 |
T |
|
| Q |
301 |
agttaacatgtaaagtaacaaacatgtaagttcatgaataggtgagattcagagcttccaacctcctggaatactggaaagcatatggcattataattga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14615541 |
agttaacatgtaaagtaacaaacatgtaagttcatgaataggtgagattcagagctcccaacctcctggaatactggaaagcatatggcattataattga |
14615442 |
T |
|
| Q |
401 |
ctctgtttaagggactcacag |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14615441 |
ctctgtttaagggactcacag |
14615421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 6293543 - 6293583
Alignment:
| Q |
200 |
tctagtgactggactatccttcatctgatttactatcctta |
240 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| |||||| |
|
|
| T |
6293543 |
tctagtgatttgactatccttcatctgatttactctcctta |
6293583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University