View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12323_high_4 (Length: 304)
Name: NF12323_high_4
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12323_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 48535833 - 48536115
Alignment:
| Q |
9 |
cagaacctgtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaact |
108 |
Q |
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| T |
48535833 |
cagaaccagtgtgtagatctccatgtattagtgcctgagccctctcacagaacctgaatgaacataaattttcatcaacaaaaacccaaacaacaaaact |
48535932 |
T |
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| Q |
109 |
actgcattaaaagaagaagaaa-gtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagcttcagtagattgtcttcccgaaca |
207 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48535933 |
actgcattaaaagaagaaaaaaagtgagagtgtgagacatatataatactttgattttagctcagcaacttcaagctttagtagattgtcttcccgaaca |
48536032 |
T |
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| Q |
208 |
gcctcagcatcacggtcaagattaggtgaagtccaacgattatactcagaaactttgtatgggtcagagaaaacaacctgctc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48536033 |
gcctcagcatcacggtcaagattaggtgaagtccaacgattatactcagaaactttatatgggtcagagaaaacaacctgctc |
48536115 |
T |
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