View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12323_high_5 (Length: 288)

Name: NF12323_high_5
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12323_high_5
NF12323_high_5
[»] chr3 (3 HSPs)
chr3 (1-279)||(11897160-11897438)
chr3 (33-247)||(26432587-26432801)
chr3 (61-145)||(23424570-23424654)
[»] chr8 (3 HSPs)
chr8 (4-279)||(23132442-23132717)
chr8 (42-145)||(26587277-26587380)
chr8 (83-241)||(14760016-14760174)
[»] chr2 (11 HSPs)
chr2 (1-279)||(14653537-14653815)
chr2 (3-253)||(40328189-40328439)
chr2 (45-154)||(16322502-16322611)
chr2 (1-142)||(26791330-26791471)
chr2 (45-139)||(35135219-35135313)
chr2 (45-142)||(573245-573342)
chr2 (45-139)||(3779048-3779142)
chr2 (42-142)||(177549-177649)
chr2 (91-142)||(35062956-35063007)
chr2 (45-127)||(19265469-19265551)
chr2 (61-147)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-279)||(20284861-20285139)
chr1 (45-154)||(50236550-50236659)
chr1 (45-142)||(50451951-50452048)
chr1 (45-103)||(23465403-23465461)
[»] scaffold0036 (1 HSPs)
scaffold0036 (52-142)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (36-142)||(32874457-32874563)
chr5 (45-142)||(7817188-7817285)
[»] chr4 (5 HSPs)
chr4 (33-139)||(54477407-54477513)
chr4 (35-145)||(14307826-14307936)
chr4 (35-145)||(14291777-14291887)
chr4 (45-142)||(3881771-3881868)
chr4 (42-145)||(46784469-46784572)
[»] chr6 (4 HSPs)
chr6 (45-145)||(24893833-24893933)
chr6 (61-145)||(24990660-24990744)
chr6 (45-151)||(13599639-13599745)
chr6 (45-102)||(35233542-35233599)
[»] chr7 (2 HSPs)
chr7 (45-148)||(16769956-16770059)
chr7 (6-139)||(1353794-1353927)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 11897160 - 11897438
Alignment:
Q  1 agctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11897160 agctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtga 11897259  T
Q  101 tccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  11897260 tccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcacccatccaaatcacc 11897359  T
Q  201 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11897360 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctctcaggttc 11897438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 33 - 247
Target Start/End: Complemental strand, 26432801 - 26432587
Alignment:
Q  33 tactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 132  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||| ||||||    
T  26432801 tactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatccattgtccccttatctcttcatcatttgca 26432702  T
Q  133 tggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccctacggggccgcatttatcccatctcctatt 232  Q
    |||||||||| || |||||||| ||||| || ||| ||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| ||||| ||    
T  26432701 tggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccgattcaaatcactcctacggggccgcatttatcccacctcctttt 26432602  T
Q  233 tgcagatgatgtcct 247  Q
    |||| ||||||||||    
T  26432601 tgcaaatgatgtcct 26432587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 23424570 - 23424654
Alignment:
Q  61 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 145  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || |||||||||||||||||    
T  23424570 tgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 23132717 - 23132442
Alignment:
Q  4 tcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  23132717 tcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatac 23132618  T
Q  104 gttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132617 gttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccct 23132518  T
Q  204 acggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctcacaggttc 279  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  23132517 acggggccccatttatcccatctcctatttgcagatgatgtccttcttatttctaaggctaagacctctcaggttc 23132442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 26587277 - 26587380
Alignment:
Q  42 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 141  Q
    ||||| ||||| ||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||| || || || ||||| ||||| ||||| || |    
T  26587277 ctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcattctttgtatggagaaac 26587376  T
Q  142 tttc 145  Q
    ||||    
T  26587377 tttc 26587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 14760016 - 14760174
Alignment:
Q  83 tggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgg 182  Q
    |||||| || ||||| |||||||||||||| || || ||||| ||||| ||||||||||| ||   ||||||||| ||||| |||   |||||||| |||    
T  14760016 tggccttcgccaaggagatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgg 14760115  T
Q  183 gcacccatccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 241  Q
    | |||  | ||||||||   ||||||||| ||  |||| || || ||||||||||||||    
T  14760116 gaaccggttcaaatcacaaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 14653815 - 14653537
Alignment:
Q  1 agctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  14653815 agctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcctccaacaaggtga 14653716  T
Q  101 tccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacc 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  14653715 tccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcacccatccaaatcact 14653616  T
Q  201 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||    
T  14653615 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttcttatgctaagacctctcaggttc 14653537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 40328189 - 40328439
Alignment:
Q  3 ctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 102  Q
    |||||||||||||| ||  | || ||||| ||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| |    
T  40328189 ctcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgacc 40328288  T
Q  103 cgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacccc 202  Q
    ||||||| ||||||||||||||||| || |||||||| || || | ||| || || || || |||  |||||| ||||||| ||| || ||||||||       
T  40328289 cgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaaccgatacaaatcacaaa 40328388  T
Q  203 tacggggccgcatttatcccatctcctatttgcagatgatgtccttctttt 253  Q
    ||||||| |  |  |||| || || || |||||||||||||| ||||||||    
T  40328389 tacgggggccaaggtatctcacctactctttgcagatgatgttcttctttt 40328439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 144  Q
    |||||||| |||||| |||| |||||||||||  | |||||||| ||||||||||| ||| | || || || |||||||| |||||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  145 cagctgctat 154  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26791330 - 26791471
Alignment:
Q  1 agctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtga 100  Q
    |||||||||||||||||||  ||||  | || | |||||| ||||||||||| || | |||||| |||||| ||||| | ||||||||| | || |||||    
T  26791330 agctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcaggcagggtga 26791429  T
Q  101 tccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||| | ||||| || ||||| || ||||||||||| |||||    
T  26791430 tccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 35135313 - 35135219
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 139  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| |||||||| ||||||||||||||||| || ||||||||    
T  35135313 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 573245 - 573342
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||||||| |||||  |||  ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||||||||||||| |||||    
T  573245 tggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 3779142 - 3779048
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaa 139  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| ||||||||||||||||| || ||||||||    
T  3779142 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 177549 - 177649
Alignment:
Q  42 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 141  Q
    ||||||||||| ||||| | ||| ||| |||||||| | ||||| ||  |||||||||| || ||||| ||||| || |||||| | |||||||||||||    
T  177549 ctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaaggtgaccctttgtctccttacctattcatcatctgcatggaaaagc 177648  T
Q  142 t 142  Q
    |    
T  177649 t 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 35063007 - 35062956
Alignment:
Q  91 gacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||||||||||||  | ||||| ||||||||||||||||| |||||||||||    
T  35063007 gacaaggtgatccactatccccctatcttttcatcctttgtatggaaaagct 35062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 19265469 - 19265551
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcct 127  Q
    |||||||| |||||| |  | |||||||||||| | ||||| || || |||||||| ||| |||| |||||||||||||||||    
T  19265469 tggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcct 19265551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  61 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcag 147  Q
    |||| |||||||||||  | ||||||||||| |||||||| ||  | || |||||||| || || || |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 20284861 - 20285139
Alignment:
Q  1 agctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||   ||||||||||||| ||||||| |||||||| |||||||||||    
T  20284861 agctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcctgcgacaaggtga 20284960  T
Q  101 tccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctataaactcagcagtcgcccaaggaagatgggcacccatccaaatcacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20284961 tccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcacccatccaaatcacc 20285060  T
Q  201 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctcacaggttc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20285061 cctacggggccgcatttatcccatctcctatttgcagatgatgtccttcttttttctaaggctaagacctctcaggttc 20285139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 50236659 - 50236550
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 144  Q
    ||||| ||||||||| |||| |||||||||||| | ||||||||| || ||||||||||| | |||||||| ||||||||| | || ||||| || || |    
T  50236659 tggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactat 50236560  T
Q  145 cagctgctat 154  Q
    ||| ||||||    
T  50236559 cagttgctat 50236550  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 50451951 - 50452048
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || ||||| || ||||| ||||| ||||| |||||    
T  50451951 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatcc 103  Q
    |||||||| ||||| ||||||| |||||||||| | ||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

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Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  52 ggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||||||| ||||  | ||||||||| | ||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  36 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatgg 135  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||| | || || ||| | |||||| |||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  136 aaaagct 142  Q
    |||||||    
T  32874463 aaaagct 32874457  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 7817188 - 7817285
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    ||||||||||||||  | ||  ||||||||||| | ||||| ||| |||| ||||| || || || ||||| |||||||| |||||||||||||||||    
T  7817188 tggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 54477513 - 54477407
Alignment:
Q  33 tactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgca 132  Q
    |||| ||| ||||||||||| |||||| | ||  ||||||||||| | ||||| || || ||||||||||| |||||||||||||| ||||| |||||||    
T  54477513 tactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtctgcgccaaggtgatcctttgtccccttatctcttcattctttgca 54477414  T
Q  133 tggaaaa 139  Q
    |||||||    
T  54477413 tggaaaa 54477407  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 14307826 - 14307936
Alignment:
Q  35 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 134  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| |||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  135 gaaaagctttc 145  Q
    ||||| |||||    
T  14307926 gaaaaactttc 14307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 14291777 - 14291887
Alignment:
Q  35 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatg 134  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||||||| ||||||| |||||    || ||||| ||||||||| | || |||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatctgtatg 14291876  T
Q  135 gaaaagctttc 145  Q
    ||||| |||||    
T  14291877 gaaaaactttc 14291887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 3881771 - 3881868
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagct 142  Q
    |||||||| |||||  |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| ||||| |||||||||||    
T  3881771 tggaatggtaacaaaatgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 46784572 - 46784469
Alignment:
Q  42 ctttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagc 141  Q
    ||||||||||| || || |||||||||||||| ||| | ||||||||  |||||||||||||  | || || || || ||||||||||||||| |||| |    
T  46784572 ctttggaatggaaataaattgccgcctttcaaacctactcatggccttagacaaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaac 46784473  T
Q  142 tttc 145  Q
    ||||    
T  46784472 tttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 24893933 - 24893833
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 144  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| || ||||||||||||||||    
T  24893933 tggaatggtaacaaaatgccccctttcaagcccacacatggtctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagcttt 24893834  T
Q  145 c 145  Q
    |    
T  24893833 c 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 24990744 - 24990660
Alignment:
Q  61 tgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttc 145  Q
    |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| ||||||||||| ||||||||    
T  24990744 tgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagctttc 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 144  Q
    |||||||| |||||||| ||||  ||||||||| | ||||  ||||| |||||||||||  | || |||||||| |||||| | || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  145 cagctgc 151  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatc 102  Q
    |||||||| |||||||||||   |||||||||| | ||||| ||||||||||||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 16770059 - 16769956
Alignment:
Q  45 tggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagcttt 144  Q
    |||||||| ||||| ||||||| |||||| ||| | ||||| || ||||||||||||||  | || |||||||| |||||| | || |||||||| || |    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaactct 16769960  T
Q  145 cagc 148  Q
    ||||    
T  16769959 cagc 16769956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 1353927 - 1353794
Alignment:
Q  6 atcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggcctccgacaaggtgatccgt 105  Q
    |||||||||||||| || ||  | | || |||||| || | ||||||||| ||| || | || ||||||||| | |||||||||  ||||||||||||      
T  1353927 atcatgcattgcgttgcctcctccactttctctatcctctcgaatgggaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccac 1353828  T
Q  106 tgtccccttatcttttcatcctttgcatggaaaa 139  Q
    | || || ||||||||||| ||||| ||||||||    
T  1353827 tctcaccatatcttttcattctttgtatggaaaa 1353794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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