View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12323_low_1 (Length: 506)
Name: NF12323_low_1
Description: NF12323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12323_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 28 - 488
Target Start/End: Complemental strand, 23869880 - 23869422
Alignment:
| Q |
28 |
gaaagaacttaaatgactcctgccctctttcgaaaacacaatgctaactcccaactaattttagcagaaattcaaaaataggtgatcgacacaatctaaa |
127 |
Q |
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| T |
23869880 |
gaaagaacttaaatgactcctgccctctttcgaaaacactatgctaactcccaactaattttagcagaaattcaaaagtaggtgatcgacacaatctaaa |
23869781 |
T |
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| Q |
128 |
ttagttttgggtttaactctttttaagatcatgcgccaagcaaaaacatgctttgaaagggataaaattgtggcaaaacatagaattgaaatgtttcatt |
227 |
Q |
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| T |
23869780 |
ttagttttgggtttaactctttttaagatcatgcgccaagcaaaaatatgctttgaaagggataaaattgtgccaaaacatagaattgaaatgtttcatt |
23869681 |
T |
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| Q |
228 |
ccccctttacaaatcacaatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctag |
327 |
Q |
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| T |
23869680 |
ccccctttacaaatcacaatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctag |
23869581 |
T |
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| Q |
328 |
ctcacacctcagaactttcatacacgaatgttaagaatgcaataggcaatacacggtacctaatagacaggcctgtacttacaaatacaattctaaaaac |
427 |
Q |
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| T |
23869580 |
ctcacacctcagaactttcatacacgaatgttaagaatgcaataggcaatacac-gtacctaatagacaggcctgtacttacaaatacaattctaaaaac |
23869482 |
T |
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| Q |
428 |
actaggttagatagaaattttggaaagtcttaacagtaagaattaaaaaccagtccattgt |
488 |
Q |
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| T |
23869481 |
actaggttagatagaaattttggaaagtc-taacagtaagaattaaaaaccagtccattgt |
23869422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 23452589 - 23452677
Alignment:
| Q |
244 |
caatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctcac |
332 |
Q |
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|||||||||||||| ||| |||||| | || ||||||||||||||| || | ||||||| |||| ||||||||| ||||||| |||||| |
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| T |
23452589 |
caatatagaattaaatttaaacaatatgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcac |
23452677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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